Gene PC1_0220 details

Gene Information

• Locus tag: PC1_0220
• ID: 8131128
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 260271
• End bp: 260960
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 644863496
• Product: endonuclease V
• Protein accession: YP_003015816
• Protein GI: 253686626
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1515] Deoxyinosine 3'endonuclease (endonuclease V)

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATTGATA CACAACAGCT GCGGGCGGAG CAACTGGCCC GCGCTTCTGA TGTGATTCGG 
CACGACGATT TACCTTTTGA GCAGCCTGCG TTTATCGCGG GTGCGGATGT TGGCTTTGAG 
CAAGAAGGGT CGGTAACTCG CGCGGCGATT GCGGTAATGC GCTATCCTTC GTTGGAGCTG 
GTAGAATACA AGATTGCGCG TATCAGCACG ACGATGCCCT ACATCCCCGG TTTTCTTTCG 
TTTCGTGAAT GCCCTGGGCT GTTAGCTGCG TGGGCGCTGC TTGAACAGAA GCCGGATTTG 
TTGTTTGTCG ATGGGCATGG GATTTCTCAC CCACGGCGTC TCGGCGTTGC CAGCCATTTT 
GGTTTGCTGG TCGATGTTCC GACGATTGGT GTGGCAAAAA GTCGGCTGTG CGGTCGATTT 
GAACCGTTGA CGGAGAGCGT CGGCAGCCAG CAGCCGTTAC TGGATAAGGG TGAGCAGATT 
GGCTGGGTAT GGCGCAGCAA AGCGCGCTGT AACCCGCTGT TCGTGGCGAC GGGGCATCGA 
GTCAGTCAGG ACAGCGCATT GCACTGGGTA CAATCCTGTA TGCGTGGCTA CCGTTTACCG 
GAGCCGACCC GTTGGGCTGA TGCGGTTGCA TCGAATCGCC CTGCATTTGT GCGTTGGCAA 
CGGCAGCAAG CCGCTAACGT ATTGTCGTAA 

 

Protein sequence

MIDTQQLRAE QLARASDVIR HDDLPFEQPA FIAGADVGFE QEGSVTRAAI AVMRYPSLEL 
VEYKIARIST TMPYIPGFLS FRECPGLLAA WALLEQKPDL LFVDGHGISH PRRLGVASHF 
GLLVDVPTIG VAKSRLCGRF EPLTESVGSQ QPLLDKGEQI GWVWRSKARC NPLFVATGHR 
VSQDSALHWV QSCMRGYRLP EPTRWADAVA SNRPAFVRWQ RQQAANVLS