| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0216 |
|---|
| Symbol | |
|---|
| ID | 8131124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 255336 |
|---|
| End bp | 257291 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644863492 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_003015812 |
|---|
| Protein GI | 253686622 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACAG ACCCCTTGTC TATAAACACA GTGTCGTCAA AATCGGGTCG CCGCGAGCAG
CGTGCCGCCG CCCAGCAGTT TATTGAAACC TTACAGGGAA CGGCCTTTCC CAATTCCAAA
CGCATTTATC TTACGGGCTC GCGCGACGAC ATCGCCGTAC CGATGCGGGA AATTCAGCTC
AGCCCGACGC TACTCGGCGG CAGCAAAGAC AACCCCCAGT ACGAACCCAA TGAACCAATC
CCGGTTTACG ATACGTCAGG GCCTTATGGC GACCCCGCAG CCCAACCCGA TGTCCGCATT
GGCTTAGCGA AGCTGCGCGC CAGCTGGATT GCAGAACGCA GCGACACCGA GGCACTCTCT
GGCGTCAGCT CCGATTTCAC CCAGCAGCGT CTGGCAGATG CGGGGCTTGA TCATCTGCGC
TTTGAACACC TGCCACGGCC GCTGCGTGCC AAAGCAGGCA AACGTGTCAC CCAGCTCCAC
TATGCGCGAC AGGGAATCAT TACCCCCGAA ATGGAATTTA TCGCCCTTCG CGAAAACATG
GGACGCGAGC GTATTCGCAC CGACGTGCTG CGTCAGCAGC ATCCAGGGCA AAGTTTTGGC
GCCCTACTGC CGGAGAACAT CACGCCGGAA TTTGTCCGTC AGGAAGTGGC CGCCGGGCGC
GCCATCATCC CTTCCAACAT CAATCACCCA GAATCAGAGC CGATGATTAT CGGACGCAAT
TTTCTGGTGA AGGTTAACGC CAATATTGGT AACTCCGCTG TGACATCCTC CATCGAAGAA
GAGGTGGAAA AGCTGGTCTG GTCTACCCGT TGGGGCGCGG ATACGGTGAT GGATCTCTCA
ACCGGCCGCT ATATTCATGA AACCCGCGAG TGGATTCTGC GTAACAGTCC CGTGCCAATC
GGAACCGTAC CGATCTATCA GGCGCTGGAA AAAGTTAACG GCGTGGCGGA AAACCTGAAC
TGGGAAATGT TCCGCGACAC GCTGCTGGAG CAAGCGGAAC AGGGCGTGGA CTATTTCACT
ATCCACGCCG GCGTGCTGCT GCGCTACGTG CCGATGACGG CCAAACGCCT GACCGGCATC
GTTTCGCGCG GTGGCTCGAT TATGGCGAAG TGGTGCCTAT CGCATCATAA AGAGAGCTTC
CTGTACGAAC ACTTCCGTGA AATCTGTGAA ATCTGCGCCG CTTATGACGT CGCGCTGTCA
CTGGGTGATG GTTTACGCCC CGGTTCTATT CAGGATGCTA ACGACGAAGC CCAGTTTGCC
GAGCTGCATA CGCTGGGCGA GCTGACCAAA ATCGCCTGGG AATACGACGT ACAGGTGATG
ATCGAAGGCC CCGGTCACGT TCCAATGCAA ATGATCCGCC GCAACATGAC CGAAGAACTG
GAGCACTGCC ATGAAGCCCC GTTCTATACG CTCGGCCCGT TAACCACCGA TATCGCACCG
GGTTACGATC ACTTCACCTC CGGTATTGGC GCCGCCATGA TCGGCTGGTT CGGCTGCGCG
ATGCTCTGTT ACGTCACGCC GAAGGAGCAT CTTGGCTTAC CCAATAAAGA AGACGTTAAG
CAGGGACTAA TTACCTACAA GATCGCCGCC CACGCCGCAG ATTTGGCAAA AGGTCATCCC
GGTGCGCAGA TCCGTGATAA CGCCATGTCG AAAGCACGTT TCGAATTCCG CTGGGAAGAC
CAGTTCAATC TGGCGCTCGA TCCCCAAACG GCACGCGCCT ACCACGATGA AACGCTGCCG
CAGGAATCCG GAAAAGTTGC TCACTTCTGC TCTATGTGCG GTCCTAAATT CTGCTCGATG
AAGATCTCAC AGGAAGTACG CGACTACGCC GCAAAACAGG AAGCGGAAGC CAAACCGATT
GAAGTAGGCA TGGCACAGAT GTCGCAGGAA TTCCGCTCTC GCGGCAGTGA GCTGTATCAC
AGCGCCACCA GCCTGCAAGC CGAGGAAAAC CAATGA
|
|---|
| Protein sequence | MSTDPLSINT VSSKSGRREQ RAAAQQFIET LQGTAFPNSK RIYLTGSRDD IAVPMREIQL
SPTLLGGSKD NPQYEPNEPI PVYDTSGPYG DPAAQPDVRI GLAKLRASWI AERSDTEALS
GVSSDFTQQR LADAGLDHLR FEHLPRPLRA KAGKRVTQLH YARQGIITPE MEFIALRENM
GRERIRTDVL RQQHPGQSFG ALLPENITPE FVRQEVAAGR AIIPSNINHP ESEPMIIGRN
FLVKVNANIG NSAVTSSIEE EVEKLVWSTR WGADTVMDLS TGRYIHETRE WILRNSPVPI
GTVPIYQALE KVNGVAENLN WEMFRDTLLE QAEQGVDYFT IHAGVLLRYV PMTAKRLTGI
VSRGGSIMAK WCLSHHKESF LYEHFREICE ICAAYDVALS LGDGLRPGSI QDANDEAQFA
ELHTLGELTK IAWEYDVQVM IEGPGHVPMQ MIRRNMTEEL EHCHEAPFYT LGPLTTDIAP
GYDHFTSGIG AAMIGWFGCA MLCYVTPKEH LGLPNKEDVK QGLITYKIAA HAADLAKGHP
GAQIRDNAMS KARFEFRWED QFNLALDPQT ARAYHDETLP QESGKVAHFC SMCGPKFCSM
KISQEVRDYA AKQEAEAKPI EVGMAQMSQE FRSRGSELYH SATSLQAEEN Q
|
|---|
| |