Gene PC1_0205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0205 
SymbolrpoB 
ID8131113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp239453 
End bp243481 
Gene Length4029 bp 
Protein Length1342 aa 
Translation table11 
GC content51% 
IMG OID644863481 
ProductDNA-directed RNA polymerase subunit beta 
Protein accessionYP_003015801 
Protein GI253686611 
COG category[K] Transcription 
COG ID[COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit 
TIGRFAM ID[TIGR02013] DNA-directed RNA polymerase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTTACT CCTATACCGA GAAAAAACGC ATTCGTAAGG ATTTTGGTAA ACGTCCACAG 
GTTTTGGACA TACCTTATCT CCTTTCTATC CAACTTGACT CGTTCCAGAA GTTTATCGAG
CAAGACCCGG AAGGTCAGTA CGGTTTGGAA GCTGCATTCC GTTCTGTTTT CCCCATAAAA
AGCTATAGCG GTAATTCAGA GCTGCAATAC GTTAGCTATC GCTTGGGCGA GCCAGTATTT
GACGTTAAAG AATGTCAGAT CCGTGGTGTG ACGTTCTCTG CGCCGCTGCG CGTTAAACTG
CGCCTGGTGA TCTACGAGCG CGAAGCGCCT GAAGGCACCG TTAAAGACAT CAAAGAACAA
GAAGTTTACA TGGGCGAAAT TCCGCTCATG ACCGATAACG GTACCTTCGT GATCAACGGT
ACTGAGCGCG TAATCGTGTC TCAGTTGCAC CGTAGTCCAG GTGTGTTCTT CGATAGCGAC
AAAGGTAAAA CCCACTCTTC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT
GGTTCCTGGT TGGATTTCGA GTTTGATCCG AAGGATAACC TGTTTGTTCG TATCGACCGT
CGCCGCAAAC TGCCTGCGAC CATTATCCTG CGTGCGCTGG GTTACTCCAC CGAGCAGATT
CTCGATCTTT TCTTCGATAA AATTGTCTAT GAAATCAATG GCAATAAATT GCAGATGGAT
CTGGTTCCTG AGCGCCTGCG TGGTGAAACC GCCTCGTTTG ATATCGAAGC GAACGGTAAA
GTTTATATCG AAAAAGGCCG CCGTATCACT GCACGCCATA TCCGTCAGTT AGAGAAAGAC
GGTATTGAGC GCATTGAAGT GCCTGTTGAA TATATCGCTG GCAAAGTTCT GTCCAAAGAC
TATATCGACG AGAGCACCGG TGAACTGATC GGCGCAGCTA ACATGGAGCT GTCGCTGGAT
CTGCTGGCTA AACTGAGCCA GTCTGGCCAC AAACGTATTG AGACTCTGTT CACCAACGAT
CTTGATCATG GTGCATACAT GTCTGAAACC GTGCGTGTCG ATCCGTCAAA CGATCGCCTG
AGCGCACTGG TTGAAATCTA TCGCATGATG CGTCCTGGTG AGCCGCCAAC GCGTGAAGCA
GCAGAAACGC TGTTCGAGAA CCTGTTCTTC TCTGAAGACC GCTACGATCT GTCTGCGGTT
GGTCGTATGA AGTTCAACCG TTCTCTGTTA CGTGATGAGA TCGAAGGTTC TGGTATCCTG
AGCAAAGATG ACATCATCGA AGTGATGAAG AAGCTCATTG ATATCCGTAA CGGTAAAGGC
GAAGTGGACG ATATCGACCA CCTCGGCAAC CGTCGTATCC GTTCCGTCGG CGAAATGGCA
GAAAACCAAT TCCGCGTTGG TCTGGTGCGT GTAGAACGTG CTGTAAAAGA GCGTCTGTCT
CTGGGCGACC TCGATACGCT GATGCCACAG GATATGATCA ACGCCAAGCC GATTTCGGCT
GCCGTGAAAG AGTTCTTCGG TTCGAGCCAG CTGTCACAGT TTATGGACCA GAACAACCCG
CTGTCCGAGA TTACGCACAA ACGTCGTATC TCTGCATTGG GCCCAGGTGG TCTGACGCGT
GAACGCGCCG GCTTTGAAGT CCGTGACGTA CACCCAACTC ACTACGGCCG TGTTTGTCCT
ATCGAAACGC CGGAAGGTCC AAACATCGGT CTGATCAACT CCCTGTCCGT TTATGCGCAA
ACGAACGAGT ACGGTTTCCT TGAAACCCCA TATCGTCGTG TGCGTGACAA CGTGGTGACG
GATGAGATCC ATTACCTGTC TGCGATTGAA GAAGGTAACT TCGTTATCGC ACAGGCGAAC
ACCAATTTGG ACGAAGAAGG CCGCTTCATC GACGAACTGG TTACCTGCCG TAACAAAGGC
GAGTCCAGCT TGTTCAGCCG CGATCAGGTT GAATACATGG ACGTTTCCAC ACAGCAGGTG
GTTTCCGTCG GTGCATCCCT GATTCCGTTC CTGGAACACG ATGACGCCAA CCGTGCCCTG
ATGGGTGCGA ACATGCAACG TCAGGCCGTT CCGACCCTGC GCGCTGATAA GCCGCTGGTT
GGTACCGGTA TGGAACGTGC TGTTGCGGTT GACTCCGGTG TAACTGCCGT AGCCAAACGT
GGTGGTACAG TACAGTACGT GGATGCATCC CGTATTGTAA TTCGCGTTAA TGACGATGAA
ATGTATCCGG GCGAAGCCGG GATCGACATC TATAACCTGA CCAAATATAC CCGTTCTAAC
CAGAACACCT GCATCAGCCA GATGCCGTGT GTTTCTCTGG GTGAGCCGGT AGAACGTGGC
GACGTTCTGG CAGATGGCCC GTCCACCGAT CTGGGTGAAC TGGCGCTGGG TCAGAACATG
CGCGTGGCAT TCATGCCATG GAATGGTTAC AACTTCGAAG ACTCCATCCT CGTTTCTGAG
CGTGTAGTTC AGGAAGATCG CTTTACGACC ATCCATATTC AGGAACTTGC CTGTGTGTCT
CGTGACACCA AGTTAGGGCC TGAAGAAATT ACTGCGGACA TCCCGAACGT GGGTGAAGCA
GCACTTTCCA AACTGGATGA GTCCGGCATT GTTTACATCG GTGCGGAAGT GACCGGTGGT
GACATTCTGG TTGGTAAGGT TACGCCGAAA GGTGAAACCC AGCTGACGCC AGAAGAAAAA
CTGCTGCGTG CGATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACTCTTC TCTGCGTGTA
CCAAACGGTG TTTCCGGTAC GATTATCGAC GTACAGGTCT TTACCCGCGA TGGCGTGGAA
AAAGACAAGC GTGCGTTGGA AATCGAAGAA ATGCAGCTGA AGCAGGCGAA GAAAGACCTG
ACTGAAGAAT TGCAGATTCT GGAAGCGGGC CTGTTTGCAC GTATCCACGC TGTGCTGGTT
TCCGGCGGCG TAGAAGCCGA CAAACTGGAC AAACTGCCGC GTGAGCGCTG GTTGGAACTG
GGTCTGACTG ATGAAGATAA ACAGAATCAG TTGGAACAGT TGGCAGAACA GTATGATGAG
CTGAAGCACG AGTTTGAGAA AAAACTCGAA GCTAAGCGCC GTAAAATCAC TCAGGGCGAT
GATCTGGCAC CGGGCGTGCT GAAAATCGTT AAGGTTTATC TGGCTGTTAA ACGTCAGATC
CAACCGGGTG ACAAAATGGC AGGTCGTCAC GGGAACAAAG GTGTTATCTC CAAGATCAAC
CCGATCGAAG ATATGCCTTA CGATGAGAAC GGTACGCCGG TCGATATCGT ACTGAACCCG
CTGGGCGTAC CTTCACGTAT GAACATTGGT CAGATTCTGG AAACCCACCT GGGTATGGCT
GCGAAAGGTA TCGGCGAGAA AATCAACGCC ATGCTCAAGC AGCACGAAGA AGTGACTAAA
CTGCGTGAGT TCATCCAGAG AGCCTACGAT CTGGGCGACG ATGTGCGTCA GAAAGTCGAC
CTGAGCACTT TCTCAGACGA AGAAGTTATG CGTCTGGCTG AAAACCTGAA GAAAGGTATG
CCAATTGCAA CGCCGGTATT CGACGGTGCA AAAGAGAAAG AAATCAAGGA ACTGTTGCAG
ATGGGCGGTA TCCCTACCTC CGGTCAGATT ACCCTGTACG ATGGACGTAC CGGTGAGAAA
TTTGAGCGTC AGGTTACAGT GGGCTACATG TACATGCTGA AACTGAACCA CTTGGTTGAC
GATAAGATGC ATGCTCGTTC CACCGGTTCT TACAGCCTGG TTACTCAGCA GCCGCTGGGT
GGTAAGGCTC AATTCGGTGG TCAACGCTTC GGTGAGATGG AAGTGTGGGC GCTGGAAGCT
TATGGTGCAG CTTATACCCT GCAAGAAATG TTGACCGTTA AGTCTGATGA CGTGAACGGC
CGTACCAAGA TGTATAAGAA CATCGTGGAT GGCAATCATC AGATGGAACC AGGCATGCCG
GAATCCTTCA ACGTACTGTT GAAAGAAATC CGCTCGCTGG GTATCAACAT CGAGCTGGAA
GAAGAGTAA
 
Protein sequence
MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQYGLE AAFRSVFPIK 
SYSGNSELQY VSYRLGEPVF DVKECQIRGV TFSAPLRVKL RLVIYEREAP EGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALGYSTEQI LDLFFDKIVY EINGNKLQMD
LVPERLRGET ASFDIEANGK VYIEKGRRIT ARHIRQLEKD GIERIEVPVE YIAGKVLSKD
YIDESTGELI GAANMELSLD LLAKLSQSGH KRIETLFTND LDHGAYMSET VRVDPSNDRL
SALVEIYRMM RPGEPPTREA AETLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL
SKDDIIEVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR
ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRDNVVT
DEIHYLSAIE EGNFVIAQAN TNLDEEGRFI DELVTCRNKG ESSLFSRDQV EYMDVSTQQV
VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR
GGTVQYVDAS RIVIRVNDDE MYPGEAGIDI YNLTKYTRSN QNTCISQMPC VSLGEPVERG
DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS
RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDSSLRV PNGVSGTIID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL
TEELQILEAG LFARIHAVLV SGGVEADKLD KLPRERWLEL GLTDEDKQNQ LEQLAEQYDE
LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN
PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGEKINA MLKQHEEVTK
LREFIQRAYD LGDDVRQKVD LSTFSDEEVM RLAENLKKGM PIATPVFDGA KEKEIKELLQ
MGGIPTSGQI TLYDGRTGEK FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GNHQMEPGMP
ESFNVLLKEI RSLGINIELE EE