| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0193 |
|---|
| Symbol | |
|---|
| ID | 8131093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 223071 |
|---|
| End bp | 223928 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644863461 |
|---|
| Product | glutamate racemase |
|---|
| Protein accession | YP_003015789 |
|---|
| Protein GI | 253686599 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0796] Glutamate racemase |
|---|
| TIGRFAM ID | [TIGR00067] glutamate racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00438881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACCG CACGGCAGGG CGAGAATACT ATCTCACCGG AAGCTATACC TTCTAACCTG
CCATCCCGTC CTACGGTTCT GGTCTTCGAT TCCGGCGTAG GCGGGCTGTC TGTTTATGAT
GAAATCCGGC AGCTCTTGCC GGATCTTCAC TATATATACG CATTCGATAA CGAAGCGTTT
CCGTATGGTG AGAAATCACA GCAGTTTATT ATCGAGCGCG TGGTTGAGAT TGTTAATGCA
GTTCAACTAC GTCATCAGCT CGCACTAGTT GTGATTGCCT GTAATACGGC AAGTACAATT
TCCCTTCCTG CGTTACGTGA GCGTTTTACT TTCCCTGTCG TGGGCGTCGT CCCAGCAGTG
AAGCCTGCAG CTAAACTGAC GCGCAACGGT GTTGTTGGCT TATTGGCGAC GCGCGCAACG
GTTCAACGTC CATATACGCA CGAACTGATT GCCCGTTTTG CGACGGATTG CCAGATTTTG
TCTCTCGGGT CATCAGAGCT GGTTGAATTG GCAGAGGCAA AGTTGCAGGG GGAGACGATT
TCTATTTCCG AGCTGCAAAA AATCCTGCGC CCTTGGCTGC GTTTGCCGGA GCCGCCAGAT
ACGGTTGTAC TAGGTTGTAC GCATTTTCCG TTGTTAGCAG AAGAGCTGAA AGCGGCGTTG
CCAGATGGAA CACGCCTTGT TGATTCTGGT GCTGCTATTG CCAGAAGAAC AGCATGGTTA
ATTGCTAATC TGGATAATCC GCCACTTTCG ACAGATAAGA ATCTGGTTTA TTGCCTGGCG
ATTACACCTA AAGTCGCTAC TTTGTGGCCA ATATTGCAGC GCTATGGCTT CGATTCGCTG
GAAAAACTAC CACTTTGA
|
|---|
| Protein sequence | MATARQGENT ISPEAIPSNL PSRPTVLVFD SGVGGLSVYD EIRQLLPDLH YIYAFDNEAF
PYGEKSQQFI IERVVEIVNA VQLRHQLALV VIACNTASTI SLPALRERFT FPVVGVVPAV
KPAAKLTRNG VVGLLATRAT VQRPYTHELI ARFATDCQIL SLGSSELVEL AEAKLQGETI
SISELQKILR PWLRLPEPPD TVVLGCTHFP LLAEELKAAL PDGTRLVDSG AAIARRTAWL
IANLDNPPLS TDKNLVYCLA ITPKVATLWP ILQRYGFDSL EKLPL
|
|---|
| |