Gene PC1_0192 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0192 
SymbolbtuB 
ID8131092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp221231 
End bp223126 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content45% 
IMG OID644863460 
Productvitamin B12/cobalamin outer membrane transporter 
Protein accessionYP_003015788 
Protein GI253686598 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01779] TonB-dependent vitamin B12 receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.051851 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAAAA AAATTTCGCT GCTGACGGCG CTTTCCGTCA CGGCATTTTC TGGCTGGGCG 
CAGGAAAATC AAAATTCGTC ATCGGAAAAA AATGCTGATG ACATGGTGGT AACGGCCAAT
CGTTTCGCAC AGCCGGTGTC TTCGGTGTTG GCACCAATTG ATGTGGTTAC TCGTGATGAT
ATCAATAGGT GGCAAGCGAA AAATGTTTTG GAAGTTATGC GTCGATTGCC AGGGGTGAAT
ATTGCTCAAA CCGGTGGAGT GGGGCAAAGC GCATCAATGT ATATTCGGGG CTCAGAAGCA
CGTCATACGT TGGTACTCAT TGATGGTGTT CCTATTGCTA AATACGGTAT TACAGGCAAT
CCAGATTTCA ACCTTATTCC TATTGCTTTA GTACAACGCA TTGAATTTAT GCGTGGCCCA
CGTTCGGCGG TATACGGGGC TGATGCTATT GGTGGCGTAA TTAATATCAT TACGCAAACA
ACAGAAAATA AAACCGTACT CAGTACTGGG ATTGGTTCGA ACCGCTATCA GGAATACAGT
GGCAGCCTGC ATCAGTCGGT TGGTGATAAC ACTCGGGTCT CTTTAGCTGG AGCTTATCAG
GATTCTCGGG GGTTTAATGT TTATCCGAAC TCTTCTAATC AAGCGTTAGA CTCAGACAAA
GATGGCTGGC GTAACAAAAC ATTCTGGGCG GGTGTTGAAC ATCAGTTTAA CGATTCAATT
TCTGGGTTCT TCCGTGGCTA TGGTTATGGC ACTAATAGCG ATTATGATGC GCTGTCTGAT
GACACCTATG GCCCTATTAA TGATGAACAG CAGGTCTACA ACCATACTTA TAGTGGTGGT
TTGCGGTTCT CTCATGAAAA TTACGCTTCT CAGTTGATCG CCAGCTATCA GAAATACACT
TCAATTCAGT ATCTCAGCAC TCAAGGACGT TATGGTGCCT ATAATTCCCA AGATGATATA
GATCAATATG ACATGCTGTG GGGAAACACT TTGGCGTTAA GTCATGGCAT GGTCAGTGCT
GGTGTTGATT GGCGCCGGCA GAAGTTAACT TCAGAAGGCG TTAGTTTTAA TACGCTAAAT
CGTGAAAGTA ATCGCTATAA GCAGGATAAT TCAGGCGCTT ATTTAACCGC GCAACAGCAG
TATGGTGCTG TTATCTTGGA AGGATCTGTA CGCGGTGATG ATAATGAGAA ATTTGGTAGA
CATGGTACTT GGCAGTTGGC ATCAGGCTGG GAGTTTTTCC CCGACTATCG GGTAACCCTT
TCCTATGCGA CAGGTTTTCA AGCACCTACT TTAGGGCAGT TATATGGTCA GAAGCGTTTC
GATATTGAAT CAAATGAAAA CTTAAAGCCT GAAGAGTCGA AACAATGGGA AGCTGGATTG
GAAGGTGTAA CCGGGCCATT AAGTTGGCGT TTGTCGGGTT ATATTAATAA GATCGATAAT
CTGATCGCGT ATGAGTATGC TTTTGCAACA AATACCGGGA CTTATTATAA CGTTGATGCA
GCAACGATGA AGGGTTTGGA GTGGACGGGG TCATTTGAGA CAGGTGTTCT GAATCATCAA
GTCACTTTGG ACTATCTCGA TGCCCGCAAC GATGAAAATG ATAAGGTTTT GGCTCGTCGT
GCGAAACAGC AAGCAAAGTA CCAGGTTGAT TGGAATTTGT ATGACGTCGA TTTTAATCTG
AGTTATCAGT ATGTGGGTAA GCGGTTTGAT AATGCAGCGA ATACTCGCCG CTTGCCAAGC
TACAGTACTG TTGATCTCGC TGCCTCATAT CCAGTCACCT CTCATCTGAC AGTTCGTGGT
AGAATCGCCA ACCTGTTTGA TAAAGATTAC GAGACGGCAT ATGGCTACCG CACGGCAGGG
CGAGAATACT ATCTCACCGG AAGCTATACC TTCTAA
 
Protein sequence
MIKKISLLTA LSVTAFSGWA QENQNSSSEK NADDMVVTAN RFAQPVSSVL APIDVVTRDD 
INRWQAKNVL EVMRRLPGVN IAQTGGVGQS ASMYIRGSEA RHTLVLIDGV PIAKYGITGN
PDFNLIPIAL VQRIEFMRGP RSAVYGADAI GGVINIITQT TENKTVLSTG IGSNRYQEYS
GSLHQSVGDN TRVSLAGAYQ DSRGFNVYPN SSNQALDSDK DGWRNKTFWA GVEHQFNDSI
SGFFRGYGYG TNSDYDALSD DTYGPINDEQ QVYNHTYSGG LRFSHENYAS QLIASYQKYT
SIQYLSTQGR YGAYNSQDDI DQYDMLWGNT LALSHGMVSA GVDWRRQKLT SEGVSFNTLN
RESNRYKQDN SGAYLTAQQQ YGAVILEGSV RGDDNEKFGR HGTWQLASGW EFFPDYRVTL
SYATGFQAPT LGQLYGQKRF DIESNENLKP EESKQWEAGL EGVTGPLSWR LSGYINKIDN
LIAYEYAFAT NTGTYYNVDA ATMKGLEWTG SFETGVLNHQ VTLDYLDARN DENDKVLARR
AKQQAKYQVD WNLYDVDFNL SYQYVGKRFD NAANTRRLPS YSTVDLAASY PVTSHLTVRG
RIANLFDKDY ETAYGYRTAG REYYLTGSYT F