Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0192 |
Symbol | btuB |
ID | 8131092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 221231 |
End bp | 223126 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644863460 |
Product | vitamin B12/cobalamin outer membrane transporter |
Protein accession | YP_003015788 |
Protein GI | 253686598 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR01779] TonB-dependent vitamin B12 receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.051851 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTAAAA AAATTTCGCT GCTGACGGCG CTTTCCGTCA CGGCATTTTC TGGCTGGGCG CAGGAAAATC AAAATTCGTC ATCGGAAAAA AATGCTGATG ACATGGTGGT AACGGCCAAT CGTTTCGCAC AGCCGGTGTC TTCGGTGTTG GCACCAATTG ATGTGGTTAC TCGTGATGAT ATCAATAGGT GGCAAGCGAA AAATGTTTTG GAAGTTATGC GTCGATTGCC AGGGGTGAAT ATTGCTCAAA CCGGTGGAGT GGGGCAAAGC GCATCAATGT ATATTCGGGG CTCAGAAGCA CGTCATACGT TGGTACTCAT TGATGGTGTT CCTATTGCTA AATACGGTAT TACAGGCAAT CCAGATTTCA ACCTTATTCC TATTGCTTTA GTACAACGCA TTGAATTTAT GCGTGGCCCA CGTTCGGCGG TATACGGGGC TGATGCTATT GGTGGCGTAA TTAATATCAT TACGCAAACA ACAGAAAATA AAACCGTACT CAGTACTGGG ATTGGTTCGA ACCGCTATCA GGAATACAGT GGCAGCCTGC ATCAGTCGGT TGGTGATAAC ACTCGGGTCT CTTTAGCTGG AGCTTATCAG GATTCTCGGG GGTTTAATGT TTATCCGAAC TCTTCTAATC AAGCGTTAGA CTCAGACAAA GATGGCTGGC GTAACAAAAC ATTCTGGGCG GGTGTTGAAC ATCAGTTTAA CGATTCAATT TCTGGGTTCT TCCGTGGCTA TGGTTATGGC ACTAATAGCG ATTATGATGC GCTGTCTGAT GACACCTATG GCCCTATTAA TGATGAACAG CAGGTCTACA ACCATACTTA TAGTGGTGGT TTGCGGTTCT CTCATGAAAA TTACGCTTCT CAGTTGATCG CCAGCTATCA GAAATACACT TCAATTCAGT ATCTCAGCAC TCAAGGACGT TATGGTGCCT ATAATTCCCA AGATGATATA GATCAATATG ACATGCTGTG GGGAAACACT TTGGCGTTAA GTCATGGCAT GGTCAGTGCT GGTGTTGATT GGCGCCGGCA GAAGTTAACT TCAGAAGGCG TTAGTTTTAA TACGCTAAAT CGTGAAAGTA ATCGCTATAA GCAGGATAAT TCAGGCGCTT ATTTAACCGC GCAACAGCAG TATGGTGCTG TTATCTTGGA AGGATCTGTA CGCGGTGATG ATAATGAGAA ATTTGGTAGA CATGGTACTT GGCAGTTGGC ATCAGGCTGG GAGTTTTTCC CCGACTATCG GGTAACCCTT TCCTATGCGA CAGGTTTTCA AGCACCTACT TTAGGGCAGT TATATGGTCA GAAGCGTTTC GATATTGAAT CAAATGAAAA CTTAAAGCCT GAAGAGTCGA AACAATGGGA AGCTGGATTG GAAGGTGTAA CCGGGCCATT AAGTTGGCGT TTGTCGGGTT ATATTAATAA GATCGATAAT CTGATCGCGT ATGAGTATGC TTTTGCAACA AATACCGGGA CTTATTATAA CGTTGATGCA GCAACGATGA AGGGTTTGGA GTGGACGGGG TCATTTGAGA CAGGTGTTCT GAATCATCAA GTCACTTTGG ACTATCTCGA TGCCCGCAAC GATGAAAATG ATAAGGTTTT GGCTCGTCGT GCGAAACAGC AAGCAAAGTA CCAGGTTGAT TGGAATTTGT ATGACGTCGA TTTTAATCTG AGTTATCAGT ATGTGGGTAA GCGGTTTGAT AATGCAGCGA ATACTCGCCG CTTGCCAAGC TACAGTACTG TTGATCTCGC TGCCTCATAT CCAGTCACCT CTCATCTGAC AGTTCGTGGT AGAATCGCCA ACCTGTTTGA TAAAGATTAC GAGACGGCAT ATGGCTACCG CACGGCAGGG CGAGAATACT ATCTCACCGG AAGCTATACC TTCTAA
|
Protein sequence | MIKKISLLTA LSVTAFSGWA QENQNSSSEK NADDMVVTAN RFAQPVSSVL APIDVVTRDD INRWQAKNVL EVMRRLPGVN IAQTGGVGQS ASMYIRGSEA RHTLVLIDGV PIAKYGITGN PDFNLIPIAL VQRIEFMRGP RSAVYGADAI GGVINIITQT TENKTVLSTG IGSNRYQEYS GSLHQSVGDN TRVSLAGAYQ DSRGFNVYPN SSNQALDSDK DGWRNKTFWA GVEHQFNDSI SGFFRGYGYG TNSDYDALSD DTYGPINDEQ QVYNHTYSGG LRFSHENYAS QLIASYQKYT SIQYLSTQGR YGAYNSQDDI DQYDMLWGNT LALSHGMVSA GVDWRRQKLT SEGVSFNTLN RESNRYKQDN SGAYLTAQQQ YGAVILEGSV RGDDNEKFGR HGTWQLASGW EFFPDYRVTL SYATGFQAPT LGQLYGQKRF DIESNENLKP EESKQWEAGL EGVTGPLSWR LSGYINKIDN LIAYEYAFAT NTGTYYNVDA ATMKGLEWTG SFETGVLNHQ VTLDYLDARN DENDKVLARR AKQQAKYQVD WNLYDVDFNL SYQYVGKRFD NAANTRRLPS YSTVDLAASY PVTSHLTVRG RIANLFDKDY ETAYGYRTAG REYYLTGSYT F
|
| |