| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0091 |
|---|
| Symbol | |
|---|
| ID | 8130991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 115476 |
|---|
| End bp | 116153 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644863361 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003015689 |
|---|
| Protein GI | 253686499 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1738] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00697] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCGTT TTACTCCCCA GCAGCGGCTT ACGGCGCTGA TCTGGCTATC GTTGTTCCAT
GTCCTGATCA TTACATCGAG TAATTATCTG GTTCAGCTCC CGGTCTTGAT TTTCGGTTTC
CATACCACTT GGGGCGCGTT TACCTTTCCG TTTATTTTTC TGGCTACTGA CCTGACGGTA
CGGATTTTCG GTGCACCGAT GGCGCGTCGT ATTATTTTGA CCGTGATGGT ACCTGCACTG
GTGATTTCCT ATCTGGTTTC ATCCCTGTTT TATCAGGGAT CGTGGCAGTC GTTCGAAGCG
TTAAGTCAGG TAAATATCGT CGTGGCTCGT ATCGCCTGCG CCAGCTTCAT GGCGTATGTT
CTGGGTCAGA TTCTGGATGT TCACGTCTTC AATCGCCTGC GCCAAAATCG TGCGTGGTGG
GTCGCTCCAG CCGTGTCGAC CGTGTTTGGT AACTTCAGCG ATACGCTGGC CTTTTTCTTC
ATCGCGTTTT ACCACAGCAC TGATGCCTTC ATGGCTGCAA ACTGGGTCGA AATTGCGATG
GTGGACTATG CGTTCAAACT GCTGATCAGC CTGGCATTTT TCCTGCCGAT GTACGGCGTG
ATGCTGAACA TGGTACTCAA ACGTCTGAGC GAGCAAAAAG GCTCGGCCGA CTACCATTCC
GTCAGCAGCC ACCATTAA
|
|---|
| Protein sequence | MYRFTPQQRL TALIWLSLFH VLIITSSNYL VQLPVLIFGF HTTWGAFTFP FIFLATDLTV
RIFGAPMARR IILTVMVPAL VISYLVSSLF YQGSWQSFEA LSQVNIVVAR IACASFMAYV
LGQILDVHVF NRLRQNRAWW VAPAVSTVFG NFSDTLAFFF IAFYHSTDAF MAANWVEIAM
VDYAFKLLIS LAFFLPMYGV MLNMVLKRLS EQKGSADYHS VSSHH
|
|---|
| |