| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0066 |
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| Symbol | |
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| ID | 8130966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 81606 |
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| End bp | 83288 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644863336 |
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| Product | Polypeptide-transport-associated domain protein ShlB-type |
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| Protein accession | YP_003015664 |
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| Protein GI | 253686474 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTGTAAAA CCCTTTCTTT TATAAGCCTT ATTTTTTTGA TCCTCTGCAG CTCAACCTTC
GCCGCTACCC CCATTAGCCC AACGGATCGG GATGCGCTGG AACTCCAGCA AAAGTCATTA
TTGGAGCAGG CCAAACAGCA GCGCTTATCG TTGGAAAACA GCACCACCTT AACAATACCG
ACAGTCACCG CCTCAACAGC AAAGGATGCT GTCTGCTTCC CTATCCAAAG GATTACCTTT
CACGATGCAG ATGCGCTTTC GATAAAAGAT CGGACCGCCA TTCAGCAACG CTACCAAAAC
CGCTGCCTGG ATTTAGCCAC AGTCCATAAC GCCGTGAGAG AAACCACCAA CGCCTACCTC
AATCGTGGTT TTGTCACCAG TCAGGCCTAT TTACAAGAGC AAGACCTCTC CAGCGGCACG
CTCATCATCA GCATCAGCGA GGGAAAGATA GAAGCCATTC GCATGGAAGG GGAAACACCA
CTCGCAATCA AGATGGCATT CCCCGGGCTG GAAGGACGTA TTCTTAATCT GCGCGACATC
GAACAAGGGA TGGAACAGTT GAATCGTCTG CCTTCACGGC AGGTTGCAAT TGATATTCAA
CCGGGAAAAC AAGCGGGGAG TTCAATTGTT TATCTCAAGC GCATCACGAA AGCCCATCCT
GCTACCCTAT CTCTCAGCGC TGACAACAGC GGACAAAAAA ACACGGGCCG CGAGCAGCTT
TCCACCCACC TCACCCTCGA TAATCCATTG CGGCTCGCCG ATCGCTGGTG GCTGACCGCC
AGTCGCGATA GCGCATTCAG CCATAGCTAC GGCAGCAAAG CCTTATCGGG CGGGATGTCT
TTGCCTTATG GCTACTGGAC GCTCGGCTAC CAATACGCCT GGAATGACTT TTTCCAACCG
ATCCCGATCG GCAGCAGCGC GTATCGCTAT GAAGGGCAAA GTAATACTCA TCGGCTCAGC
CTTAACAGAA CGCTCTATCG AGATGGGAAG CAGAAGCTGG CGCTGGATAG CGCGCTCTCT
CGCCGACGTA CCGAGAACCG GATGGCGGGT GAACGCCTTG AGATCAGCAG CCCGACGGTC
AGCAGCGCCA GTATCGGACT CAGCTATAGC ACGACACTGG CGGGCGGATA TTTTACGCTC
AACCCGATGC TCAGCCATGG CTTAAGGAGT TGGGGCGCAA CGGATGACAC AAAGGAAAAC
CGTGACCTGC CGCGCAGCGA GTTCCGCAAA TTTAGCGCCA GCAGCAGCTA TTTCTACCCA
CTTACCCCTT CGCTGTACTT CCTGACCTCC CTTTATGGCC AGACCACGCC GGACAACCTG
TATACCAGCG AACGTGTCTC GCTCGGCGGC GAGTATTCCG TCCGGGGATT TAAGGAACAA
ACGCTGACCG GCAACCGAGG CTTCTACTGG CGTAACGAAC TGAACTGGCA ATTCACCACC
CTGCCGTTTC TGGGCGATAT CGCACTCACA ACGGCAGTGG ATAGCGGATG GATCGCGGGG
AAAACCGGCA AAGTCGATGG TGGAAATATG ACCGGAACTT CCGTCGGTTT GTCTGCATCT
TCACGTTGGG TAAGCCAGTC AGTGTCGCTC GGCGTGCCGC TGCATTTCCC GGACGATCTC
CATCCCGATA ACGCCGTTGT TTACTGGCAA GTCACCCTCC CCGTTACGGC ACTTTTTGAT
TAA
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| Protein sequence | MCKTLSFISL IFLILCSSTF AATPISPTDR DALELQQKSL LEQAKQQRLS LENSTTLTIP
TVTASTAKDA VCFPIQRITF HDADALSIKD RTAIQQRYQN RCLDLATVHN AVRETTNAYL
NRGFVTSQAY LQEQDLSSGT LIISISEGKI EAIRMEGETP LAIKMAFPGL EGRILNLRDI
EQGMEQLNRL PSRQVAIDIQ PGKQAGSSIV YLKRITKAHP ATLSLSADNS GQKNTGREQL
STHLTLDNPL RLADRWWLTA SRDSAFSHSY GSKALSGGMS LPYGYWTLGY QYAWNDFFQP
IPIGSSAYRY EGQSNTHRLS LNRTLYRDGK QKLALDSALS RRRTENRMAG ERLEISSPTV
SSASIGLSYS TTLAGGYFTL NPMLSHGLRS WGATDDTKEN RDLPRSEFRK FSASSSYFYP
LTPSLYFLTS LYGQTTPDNL YTSERVSLGG EYSVRGFKEQ TLTGNRGFYW RNELNWQFTT
LPFLGDIALT TAVDSGWIAG KTGKVDGGNM TGTSVGLSAS SRWVSQSVSL GVPLHFPDDL
HPDNAVVYWQ VTLPVTALFD
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