| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0065 |
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| Symbol | |
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| ID | 8130965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 76395 |
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| End bp | 81566 |
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| Gene Length | 5172 bp |
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| Protein Length | 1723 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644863335 |
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| Product | filamentous hemagglutinin family outer membrane protein |
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| Protein accession | YP_003015663 |
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| Protein GI | 253686473 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01731] adhesin HecA family 20-residue repeat (two copies)
[TIGR01901] filamentous haemagglutinin family N-terminal domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.290227 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAAT TCAATAACCG CGCCACACGC GGACTTAGCT ATCTGCTGAT CTATCTGACC
GCGATTCAGC CGTTACACCC CGCGTTCGCG GCACTCACAC CAGACGGCCC ACGCACGCAG
GTCAACAACG CGGGCGCCGT CCCGGTCATC AATATCGCGA CGCCAAACGC AGCGGGTGTT
TCTCACAATA CCTATAAAGA TTTTAGCGTC GGGACGCCCG GTGCCGTACT CAACAACAGC
ATTGCCGCAG GCCAATCGCA GTTGGCCGGG CAGTTAAACG CTAACGCCAA CCTCAATGGC
AAAGCGGCCG AGCTGATTAT CAACGAGGTG ACGGGCTCAA CCCGTTCAGA CCTGCAAGGG
AAGATCGAAG TCTTCGGGCA TAAAGCCAAC GTATTGATTG CCAACCCGAA TGGCATTACC
TGTGATGGAT GTGGGTTCAT CAACACACCT TCAGCCACGC TGACGACGGG TAAACCGGTG
CTGGATCAGC AAGGCGCCCT GGAAGCGTTG GAAGTGAAAA AAGGCAGCAT CACCATTGGT
GGAAAAGGCC TGGACGGTTC AGCAACGGAT TATGTCGATA TCCTCAGCCG GGCAACTGAA
CTGAACGGCA AAATCAACGC AAAAAACCTG ACGCTGACTC AAGGCAGCAA TCGGGTCGAT
GTCAAAACCG GCACGGTCGC CCCCATCGCC GGAGAAGGTG CCAAACCGCT GCTGGCGGTG
GATACCAAAG CGCTCGGCGG TATGTATGCA GAACGCATCC GGCTTGTGGC AACCGAGGAC
GGAGTCGGCG CTAACGTCGC TAACCTGACC AGCTCTCAGC AAGGCATTAC GCTGGACAGC
AAAGGTAAAA TCCAGCTCGG TAATGTGCAC GCGAAAACCG ACCTTAATCT GACCGCACAG
CAGGTCGATA TTGCTGCTGG CAATACGGTG AAAAGCGACC GAGATATCAC GCTTGCCAGT
ACCGTATTAA ATAACCGAGG GAATATCATC GCGGGCGAAG ATATGCGCCT GTTCAACGAT
AGCCTAACCA ACACGCAGGC CACTATTCAG GCCAACAACA ACCTGTGGAT CCAAAAAGAC
GCGACGGGGA ACAAAGGCGT TAAAGTCGAA AACCGCTCGG GGACGATTAA AACCAATACG
GGGGATTTGG TGATTCGGAC TGAGCAGTTG GATAATGTCG TCGAGCAGTT CTCGGTTAAT
AAAATCAGCA CACCAGCAAA TTCAACATCA ATTGATGGCC AATTTGGAAT AATGATTGAT
GGCACGGGAC CTGATTCATT CGTTACCATC TATACTGGTG TAGTAGATGA TAGGAATCTA
CGTTGGATTG GCAGTTTTAA ATTTACAGAA AGTCCTTACG CTAATACAGA AAAAAATAAA
TACACATTTA TTTCCAGCAG GGAAGGAAAC ATTTCATCAG GAAAAAATAT CTATATAAAC
TCATCTGAAC TGAATAACAA ATACAGTACT ATTTCCGCAC TTGGAGACAT TATCTCCACT
GGAAAAAATG CAAATATACT TAACCATTCA ATCGGTGATT CAAATAGTTA TGTTAAATTA
GCCCTTAAAT TCGACGAGAG GGACATTGGC ATTGATATTT CACCAATCCC TGCTGGTTTT
AATGTCGATG AATATCCATT ATGGGGAGAT GCACCAGTTC CCTTGGTTCG GGATGGCAAT
AAAAAAACCT GGTTTGAAAA AGAATATGTT AGTAGCAAAA TACATGCAGG TGGCAGTCTT
GTTTTAGATT TCACTGATAC AATAAAGATC GAGGATAACG CCCCCGAGAA TCTTACTGAA
CTTTCTGAGA AAATTTACTC AACGCCACAT TCCTATAGCA TCACAGGGAA AGAAATTATC
TTTAAGTCCA AAGATATAAA AAACCAAAGT TCCGTAAAGT CAACAGGAAA TCTGAGTCTA
TTATCTGAAG GAAATATAAA ACTAACTGGT GGTGAGCTGA ACTCGGCAGG TGATCTTTCT
ATCCTCGCAA GTAATGGCAT TGATGCAAAT CAAAATAAAT TCTTAGGAAG AAATATTACA
ATTATAAGTC GTGAAGGAGA TACTTCACTT TATACCGACA GCGCCGCAAA GCATTTCTCC
GTTGATGGAG TTCGTCAATT CAGTACATTA AATGCAACAG AAAACCTATC TATTCAGTCG
GGGAAAGACA TTCTATTAAA TGGCATTGAA ATAGGAAAAG CAAAAAATAT TTCACTTATT
TCAGGAAATA ACATTACAGT TAAAAATGAT GAGGCTATTT TAGACCCTCA AAAAATTGGC
AGTACGTTCA CCGATCCCGA AAAACAGAAA AAATTTGATT ATGCTTTTAA CCACCTTGGG
AACATTACTT CAACAGACAG CATTACGTTA AATGCCAGAA ACGTGCTGGA TATAGCAGGT
ATTTCACTGG AGGCGACTAA AGATATCAAC CTGACAGCGG GGGATAATAT CAATCTAAAT
CCAAGGGAGG TCAACACGAT TCCCGAGGCG TTATTTGCCA ACTCGCGACA GACCGAACTC
AGCAGTACTA TCAACGCCGG AAATCAGCTA TTAATTTCTA GCGGAAAAGA CTTGCTTGCA
CAATCCGCTA GCTTATCCGC CAATGGCAAT GTAGCTCTAC TCGCAGGCAA TAGCTTGAAA
TTGCTCGCTA CGGCCTACTC CGCAATTGAC AGTCAGAACG ATAATAATAA AGACGACCGA
AATGTTACCG CCAAGGTTCA TGCGGGCAAA AACCTGACGG TAGCTTCCAA TGGAGAGCTG
ATCGCAACCG GAACCGATTT CTCTTCCGGC GGCGATATGA CATTAAGTTC CGGTGGGAAA
ATGGAATTTA ACGCCGTGGC TAATCATATC TATCGAGAGG GAAGCAACGA ATATAGCGAG
TCCGTCACGC AAAAAAATGT CGTTTTAAAC AGCAGTGGAA TACTCACCCT ATTATCCAAC
GGCAGCATTC TCTTCCAAGC GACCCAGTTG CTCGCCAAAG GCACGTTAGA TGCCGCAGCC
AAAGGCGGTT TCCTTTACGC ACAAGCGGTA GAAGAAAGTA ACCATTACGA GAAAACCACC
ACCAAGCGCA AATGGTACGG CAAGAAAACC ACCATTCGAC AAACCAGCCA CAATGTAACG
AACAAAGTGA CAGAATTCAC CGCAGGCGGT GATATTAATC TGCTCAGCCG TGATGACAGC
ACCTATGAAG CCAGCAAAAT CAACGCGGGC AAGAATGCCA AGCTGACCAG CACACAAGGA
AGCATTAACT TCAAGGCGGT CAAAGACACC GCATTCGAGC AGACGATCAC CACCTCAAAA
GGGTTCTTCA TCAAGAGCAA TGACAAAGGC TATACCAAAG ACACCTGGTT GCTTCCAAGC
ATCTACTCTG GCGGCCAACT GACAATTGAT GCCGCTACTG GCATTACTGC TGATGCAAAA
ACCCAGAATG CGCAGTCCCT GCAAAATGCC CTACTAACAC TAGGTAATAA CCCCGGCACA
GCCTGGCTGA AAGATTTAAA TGCCCGCCCC GATGTGCAAT GGAACGCGGT ACAAGATGCT
TACAGTACCT GGAACCACAC CACACAAAGC CTGAACCCCG TTGTAGGTGC AGTGATTGCC
ATTGCCGTTG CAGCGGTAAC CGCAGGCACA GGACTGGCAG CAGCAGCGGG TCAGTTGGCT
GCTGGTGCTG TGGGAACGGG AGCCAGCGCG ACAACAATCG CTGTCGTAAA CGGTGCAGCT
TATTCAGGCA TGACGGCACT GACCTCGCAG GCAGCAGTCG CGCTGGTGGA TAACAAAGGC
AACCTATCCA AAACGTTCCA AGCCATGAGC AGCAGTGACT CGGTCAAATC ACTGGTTACC
TCAATGGTGA TCGGCGGTGC ATTAGCAGGA TTCGATGAAG TTATGCAGTT TAGTCAGGCT
GCTAACGGTA CAACCGTCAT CGATCCCGCT AAAGCCAAAT TGCCCATGCT CAGCAACGGT
GACTGGAGCA AGGTCGCGCA GCGTGTCGCT GGACAGTCAG TGATCAGTTC CAGCATCGGC
ACCGCAATTA ACGGCGGTAG CTTCAAAGAT AATTTCACCA CGGCGCTCTT GAGTAATATC
GGCAGTCAGA TCAATGCGGA AGGGGCGAAG TTCATTGGGG ATAAGGGAGA AGTCCTCGGC
ATAACGGGCA AAACGATTAG CCATGCCGTC GTCGCGGGCG TAGCGGCTGA AATCAGTGGT
GGTAACGTCA AAGGCGCAGC AGCTGGTGCA TTGGCGGCAG AGCTAGCGGC AATCAGTTTA
GGTAATACTT TCGTCGATCC AGCCTTAAGA GAAATACAGA TAACCTCTAC TGGCAGAATT
ATTGGTGCTT TGGCTGGAGC CGCTATTACC GGCAAAGCCA CTGGTGTTAA TAGCGGTGCT
AGTGCTGCCG AAAGTGTCCT GCTATATAAC TTCCTTATGC ATGATGAGCC AAAAACACTC
GCCGAAAAAT ACGCTGCATG TAAAGGCAGT AGCGATTGTG AGAGTAATGT ACGCAAGGAG
ATGAATCAAA CATCAGTAAA GAACCAAGAG ATATTTGAAG GATGCCGAGC AGCAGGTAAT
GCCACTTGTG TTAATGACAT GCTTTACGGA ATTTCCGAAG CATCAGGTTA CGATGAGCTC
GGCAGGTTGA TTGGCTTCGA TCTCTCTAAT TCTTATAAAG AAATGGGGCA AAATGCTTAT
GACCGCGCCA ATATCTGTGG CGGGGATATG AGTTACGGGT GTGGCCTAAA ATTGTGGGCC
GACCAACTAC CTGAAGAGCT GCTAGGTGGG ATACTCTCTT GGGGTATTGG GAAAGCTGTA
AGCCCCTTAA TTGGTAAATA TTTTACTGAA ACAGGCATAC TATCTGCTAA AGAAACCGCT
AATCGACTGG TGAATGGCAA ATGGGTGGAT GCTAATGGGC TTCCACTTCC TGTTCCACCA
AGTGTTGGCG CGGCAGGAAG AGTGCCCGTT GTATTACAAA CTGGAGGACA TACGATTACT
GCAAGAACAG CTAATGGTTT AAATAAAGAA TTTAACAAAA ACCTGACCAG TAGAGAATGG
GGAAGAGCTT TAGAATCATT GAAGGATGAT TACAGTTTAC GACATGACTT TCATGGGCGA
ATATTAGACA ATGGAAATTA TATTGATAAA GCGGGTAAAA TAATTGGTAA TATTGAGGAT
TACTTACCAT GA
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| Protein sequence | MEKFNNRATR GLSYLLIYLT AIQPLHPAFA ALTPDGPRTQ VNNAGAVPVI NIATPNAAGV
SHNTYKDFSV GTPGAVLNNS IAAGQSQLAG QLNANANLNG KAAELIINEV TGSTRSDLQG
KIEVFGHKAN VLIANPNGIT CDGCGFINTP SATLTTGKPV LDQQGALEAL EVKKGSITIG
GKGLDGSATD YVDILSRATE LNGKINAKNL TLTQGSNRVD VKTGTVAPIA GEGAKPLLAV
DTKALGGMYA ERIRLVATED GVGANVANLT SSQQGITLDS KGKIQLGNVH AKTDLNLTAQ
QVDIAAGNTV KSDRDITLAS TVLNNRGNII AGEDMRLFND SLTNTQATIQ ANNNLWIQKD
ATGNKGVKVE NRSGTIKTNT GDLVIRTEQL DNVVEQFSVN KISTPANSTS IDGQFGIMID
GTGPDSFVTI YTGVVDDRNL RWIGSFKFTE SPYANTEKNK YTFISSREGN ISSGKNIYIN
SSELNNKYST ISALGDIIST GKNANILNHS IGDSNSYVKL ALKFDERDIG IDISPIPAGF
NVDEYPLWGD APVPLVRDGN KKTWFEKEYV SSKIHAGGSL VLDFTDTIKI EDNAPENLTE
LSEKIYSTPH SYSITGKEII FKSKDIKNQS SVKSTGNLSL LSEGNIKLTG GELNSAGDLS
ILASNGIDAN QNKFLGRNIT IISREGDTSL YTDSAAKHFS VDGVRQFSTL NATENLSIQS
GKDILLNGIE IGKAKNISLI SGNNITVKND EAILDPQKIG STFTDPEKQK KFDYAFNHLG
NITSTDSITL NARNVLDIAG ISLEATKDIN LTAGDNINLN PREVNTIPEA LFANSRQTEL
SSTINAGNQL LISSGKDLLA QSASLSANGN VALLAGNSLK LLATAYSAID SQNDNNKDDR
NVTAKVHAGK NLTVASNGEL IATGTDFSSG GDMTLSSGGK MEFNAVANHI YREGSNEYSE
SVTQKNVVLN SSGILTLLSN GSILFQATQL LAKGTLDAAA KGGFLYAQAV EESNHYEKTT
TKRKWYGKKT TIRQTSHNVT NKVTEFTAGG DINLLSRDDS TYEASKINAG KNAKLTSTQG
SINFKAVKDT AFEQTITTSK GFFIKSNDKG YTKDTWLLPS IYSGGQLTID AATGITADAK
TQNAQSLQNA LLTLGNNPGT AWLKDLNARP DVQWNAVQDA YSTWNHTTQS LNPVVGAVIA
IAVAAVTAGT GLAAAAGQLA AGAVGTGASA TTIAVVNGAA YSGMTALTSQ AAVALVDNKG
NLSKTFQAMS SSDSVKSLVT SMVIGGALAG FDEVMQFSQA ANGTTVIDPA KAKLPMLSNG
DWSKVAQRVA GQSVISSSIG TAINGGSFKD NFTTALLSNI GSQINAEGAK FIGDKGEVLG
ITGKTISHAV VAGVAAEISG GNVKGAAAGA LAAELAAISL GNTFVDPALR EIQITSTGRI
IGALAGAAIT GKATGVNSGA SAAESVLLYN FLMHDEPKTL AEKYAACKGS SDCESNVRKE
MNQTSVKNQE IFEGCRAAGN ATCVNDMLYG ISEASGYDEL GRLIGFDLSN SYKEMGQNAY
DRANICGGDM SYGCGLKLWA DQLPEELLGG ILSWGIGKAV SPLIGKYFTE TGILSAKETA
NRLVNGKWVD ANGLPLPVPP SVGAAGRVPV VLQTGGHTIT ARTANGLNKE FNKNLTSREW
GRALESLKDD YSLRHDFHGR ILDNGNYIDK AGKIIGNIED YLP
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