Gene PC1_0053 details

Gene Information

• Locus tag: PC1_0053
• ID: 8130953
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 61325
• End bp: 63178
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 644863323
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_003015651
• Protein GI: 253686461
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAACA GTACAGGATT ACAGTTCACC GTTAAGGTCG GCGCATTGCC TGCGTCGACC 
TTTGCCGTGG TGGATTTTCA GCTCAGCGAG GCGCTCAACC AGCCGTTTGC CCTGTCGCTG 
AATCTGGCCA GCCCCTTACC GGGGATCGAT TTTGGTGCGG TTCTCGACCA GCCCTGCGAA 
CTCCTGGTGT GGTACGAAGG TGAACTCCAA AGACGAGTGA GCGGTATTGT CAGCGCGTTT 
GCGCAGGGCG ATACCGGCTT TCGCCGCACA CGCTATCAGG CAGAAGTCCG TCCGACTCTG 
TGGCGTTTGG GGCTACGTAC CAATGCTCGT ATATTTCAGG CGCAGAAGCC TGAGGCAATT 
ATCGGCGCCC TGCTGGAAGA AGCGGGCATC ACCGACTACG CCTTTGCGCT GCGCAACGAG 
CACGCAGTGC GGGAATATTG CGTGCAGTAC CGCGAAAGCG ATTTGGCCTT TATTGCCCGA 
CTGGCTGCCG AAGAAGGCCT GTTCTTCTTC CATGAGTTTG AGGAAGGCAA ACACCGCGTC 
GTCTTTGCCG ACGATGCAGG CGCGTTGGCA AAAGGCCCTG AGCTGTTTTT CAACCTGGCG 
ACACAGGGGC TGAGTGAAGG CGCATACGTG CGTCGTTTCC GCTATGCCGA GGCGGTGAGC 
ACAGCAGAAG TCGCACTCAA AGACTACAGC TTCAAAACCC CAGCCTATGG CCTGTTGCAC 
CAGAAAATCA GCGGAGAACT GGAACACCAG CGCGAAAGTT ACCAACACTT CGACTACCCC 
GGTCGTTTTA AACAAGATCC GAGCGGTAAA GCCTTTACCG GCTATCGGCT GGATGCACTG 
CGAGCAGGGG CGATGACCGG CTCGGGCGAA TCGAATGCCG CTGAACTGAT GCCGGGCAGC 
AGTTTCACCT TAACCGAACA CCCCAATCTG GCACTCAATA TCGGCTGGCA GTTGGTCGCC 
ATCACCCACA GCGGGCAGCA GCCGCAGGCG CTGGAAGAGG AAAGCGGCGG CGAACCGACC 
ACCTACAGCA ACAGCTTTGA AGTTGTGAAA GCTAGCACGA CCTGGCGCGC CGACCTGCCC 
TACAAACCAA TGGTAGACGG CCCGCAGATC GCCACCGTCG TCGGCCCGGC GGGTGAAGAA 
ATTTACTGCG ACCAGTACGG CAGGGTGAAA CTGCAATTCC CGTGGGACCG CTACGGCGCA 
AGCGATGACC AGAGCTCCTG CTGGGTACGC GTCAGCCAGG GTTGGGCAGG CGGCCAATAT 
GGCCTGATCG CTATCCCGCG CATCGGCCAT GAGGTCATCG TCAGCTTCCT CGAAGGCGAC 
CCGGATCAGC CCATCGTGAC GGGCAGAACC TTCCACGCCA CCAATCCCTC ACCCTACCCG 
CTACCCGCCA ACAAAACGCG CACGACACTG CGCACCACGA CCCATAAAGG CGCCGGGTTC 
AACGAACTGC GCTTTGAGGA TCAGGCTGGT CAGGAAGAAG TGTTTATCCA TGCCCAGAAG 
GACATGAACA CCGTGGTGCT GAATAACCGC AGTACATCGG TGAATGTGGA TCACAACGAA 
AACATTGGCC GCGATCAGAC TGTCGTCGTG CAGCAAAACC AGACGGTTTC TGTTATTGCC 
GATCAGGTTA CCGAGATCCA AGGGGAGCAG ACGGTGGTGG TGAAGAAAAA CCGAAGCACC 
GTCGTGGAAG ACAATGAAAC GCTGAGAGTG ACAAACAACA TCTTTATCCA CGCCGAAGAT 
GGCAGCATTC AGATTGGTAC GGGTGCGGGC TATATCTCAA TCAAGCACAG CGGGGATATT 
GAGATCGTCG GGAATAACCT GACGCTGAAC GGCACCCGTA TCGATTTGAA TTAA 

 

Protein sequence

MANSTGLQFT VKVGALPAST FAVVDFQLSE ALNQPFALSL NLASPLPGID FGAVLDQPCE 
LLVWYEGELQ RRVSGIVSAF AQGDTGFRRT RYQAEVRPTL WRLGLRTNAR IFQAQKPEAI 
IGALLEEAGI TDYAFALRNE HAVREYCVQY RESDLAFIAR LAAEEGLFFF HEFEEGKHRV 
VFADDAGALA KGPELFFNLA TQGLSEGAYV RRFRYAEAVS TAEVALKDYS FKTPAYGLLH 
QKISGELEHQ RESYQHFDYP GRFKQDPSGK AFTGYRLDAL RAGAMTGSGE SNAAELMPGS 
SFTLTEHPNL ALNIGWQLVA ITHSGQQPQA LEEESGGEPT TYSNSFEVVK ASTTWRADLP 
YKPMVDGPQI ATVVGPAGEE IYCDQYGRVK LQFPWDRYGA SDDQSSCWVR VSQGWAGGQY 
GLIAIPRIGH EVIVSFLEGD PDQPIVTGRT FHATNPSPYP LPANKTRTTL RTTTHKGAGF 
NELRFEDQAG QEEVFIHAQK DMNTVVLNNR STSVNVDHNE NIGRDQTVVV QQNQTVSVIA 
DQVTEIQGEQ TVVVKKNRST VVEDNETLRV TNNIFIHAED GSIQIGTGAG YISIKHSGDI 
EIVGNNLTLN GTRIDLN