| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0048 |
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| Symbol | dppF |
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| ID | 8130948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 54592 |
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| End bp | 55602 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644863319 |
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| Product | dipeptide transporter ATP-binding subunit |
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| Protein accession | YP_003015647 |
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| Protein GI | 253686457 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAC TGAACGCCAC ATCGCAGCCG TATTTACTGC ATGCGATTGA TTTGAAAAAA
CACTACCCGG TGAAGAAAGG CTTTTTCGCA CCGGAGCGGA TGGTGAAAGC GCTGGACGGC
GTTTCCTTTA CGCTGGAGCG CGGTAAAACG CTGGCGGTGG TGGGAGAGTC TGGCTGTGGG
AAATCCACGC TGGGCCGTCT GCTGACGATG ATCGAAACCC CGTCTGACGG TGAGCTGTAC
TATCAGGGAC AGGATCTGCT GAAACCCGAT CCTGAAGCAC AGAAGCTGCG CCGTCAGAAG
ATCCAGATCG TGTTCCAGAA TCCTTACGGA TCGCTGAACC CACGTAAGAA AGTTGGGCAG
ATCCTCGAAG AACCGCTGCT GATCAACACT GAATTGTCAA AAGCCGAGCG CCGTGAAAAA
GCGCTGGCGA TGATGGCGAA AGTCGGGCTG AAAACGGAAC ATTATGACCG CTATCCGCAT
ATGTTCTCTG GCGGCCAGCG TCAGCGTATC GCTATCGCTC GTGGGCTGAT GTTGGACCCG
GATGTGGTGA TTGCCGATGA ACCAGTTTCG GCGCTGGATG TGTCGGTACG CGCGCAGGTG
CTGAACCTGA TGATGGATTT GCAGCAGGAC TTGGGGCTGT CTTACGTCTT CATCTCGCAC
GATCTATCCG TCGTCGAACA TATCGCTGAT GAAGTGATGG TGATGTATCT GGGTCGCTGT
GTCGAGAAGG GCAGTAAAGA TGCCATTTTC AACAACCCAC GCCACCCTTA TACACAGGCG
TTACTGTCCG CGACGCCGCG TCTGAACCCG GATTTACGCC GTGAGCGCAT CAAGCTGACT
GGCGAGTTGC CCAGCCCGCT GAATCCACCG CCGGGCTGCG CGTTCAACGC CCGCTGTCAG
CGCTGCTTCA GCACCTGCAC ACAGTTCCAG CCGCAGTTGA AAACCTACGG CGAACAGCAG
GTTGCCTGCT TCGCTGTCGA TCAGGACGAA CAAGGCATCG CCGTCGCCTA G
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| Protein sequence | MSELNATSQP YLLHAIDLKK HYPVKKGFFA PERMVKALDG VSFTLERGKT LAVVGESGCG
KSTLGRLLTM IETPSDGELY YQGQDLLKPD PEAQKLRRQK IQIVFQNPYG SLNPRKKVGQ
ILEEPLLINT ELSKAERREK ALAMMAKVGL KTEHYDRYPH MFSGGQRQRI AIARGLMLDP
DVVIADEPVS ALDVSVRAQV LNLMMDLQQD LGLSYVFISH DLSVVEHIAD EVMVMYLGRC
VEKGSKDAIF NNPRHPYTQA LLSATPRLNP DLRRERIKLT GELPSPLNPP PGCAFNARCQ
RCFSTCTQFQ PQLKTYGEQQ VACFAVDQDE QGIAVA
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