Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0039 |
Symbol | |
ID | 8130939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 44714 |
End bp | 45436 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644863310 |
Product | DNA-binding transcriptional activator DcuR |
Protein accession | YP_003015638 |
Protein GI | 253686448 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG4565] Response regulator of citrate/malate metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTAATG TACTGATTGT TGATGACGAT GCCATGGTTG CAGAGCTTAA CAAATCTTAT CTGAACCAGG TTTCTGGATT TAGCTGCTAT GCGACCGTCC CTACGTTGCA GCAGGCGCGA AACCTGCTGA TGCAACCTGA CTCGGAAATC GATTTGGTAC TGCTGGACAT TTACATGCAG CAGGATAATG GACTGGATCT GCTGCCGACT ATCCGTGAAT TCAGTGAGAA GACGGACGTC ATCATCATCT CTTCTGCCAG TGACGTGTAT ACCATCAAAA AAGCGCTGCA CTATGGCGTT GTTGACTACC TGATTAAGCC TTTCCAGTTC TCGCGTTTCG AGCAAGCACT GACCGCCTAT CGCGAAGAGG CGAACTTGTT CAAGCACCGT GATTTTGTTG GGCAGTCGGA TATTGATAAC CTGATTCGCC GCACCAGTAG TAGCACGGTC AGCGAACGTA AAAAATTGCC GAAAGGGCTG ACCAGCCTGA CGCTGCGTAC CGTCTGCGAG TGGATTGAAG GCAATCAGGG CATAGAGTTC TCTACCGAAA TGCTGGCAAA TGCGATCGGC ATTTCCCGCG TATCCTGCCG TAAATACCTG ATCTATCTGT CTGACACTGG CATCCTGACC ACCAACATCC TGTATGGCTC GACCGGTCGA CCGGTTTATC TGTATCGCCT GTTGCCGGAA AAACAGGACT CGCTGCGCCA GTACTGTGAA TAA
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Protein sequence | MINVLIVDDD AMVAELNKSY LNQVSGFSCY ATVPTLQQAR NLLMQPDSEI DLVLLDIYMQ QDNGLDLLPT IREFSEKTDV IIISSASDVY TIKKALHYGV VDYLIKPFQF SRFEQALTAY REEANLFKHR DFVGQSDIDN LIRRTSSSTV SERKKLPKGL TSLTLRTVCE WIEGNQGIEF STEMLANAIG ISRVSCRKYL IYLSDTGILT TNILYGSTGR PVYLYRLLPE KQDSLRQYCE
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