| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0030 |
|---|
| Symbol | |
|---|
| ID | 8130930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 33889 |
|---|
| End bp | 35301 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644863301 |
|---|
| Product | Beta-glucosidase |
|---|
| Protein accession | YP_003015629 |
|---|
| Protein GI | 253686439 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGATC ATCTTCAGAA GGATTTTCGC TTTCCCGCGA ATTTTTGGTG GGGCAGCGCC
AGTTCGGCCC CGCAAACGGA AGGCGAAAGC CTTAATTATG GTAAAAGCGC CACCGTGTGG
GACGAATGGT TTGCCACGCA GCCCGGTCGT TTTCACCAGC AGGTTGGGCC GGCGGATACC
TCCACGTTTT ATCAGCACTG GCGTGAAGAC ATTGCGCTGC TGAAGACGTT GAATCACAAC
ACGTTCCGCA CGTCGATCTC GTGGGCGCGA CTGATTCCCG ATGGCGTCGG GGAACCGAAT
CCGCAGGCGG TGGCGTTTTA TAATCAGGTC ATTGATGAAA TGCTGGCGCA GGGCATCACG
CCGTTTATCA ACCTGTTCCA TTTTGATATG CCGATGGTGA TGCAGCGGCT GGGCGGCTGG
GAAAATCGGG CGGTGGTGGT GGCCTATGCG GGCTACGCGG CGACCTGCTT CCGTCTGTTT
GGCGATAGGG TAAAACACTG GTTTACGTTC AATGAGCCGG TGGTACCGGT GGAAGGCGGG
TATCTGTATG ATTTCCACTA CCCGAACGTC GTGGATTTCA AGCGAGCCGC GACGGTGGCG
TATCACACCA TGCTGGCGCA TTCGCTGGCG GTGAAAGCCT ATCGTGAACA GTCTCAGGGC
GGGGAAATTG GCATCATCCT CAATCTGACG CCTTCCTATC CACGTTCCCA GCATCCGGCT
GATGTTAAAG CAGCCAACAT TGCCGATCTG ATGTTTAACC GCAGTTTCCT CGATCCCGCT
TTGAGGGGCG AGTACCCACA GGAACTGGTC GATCTGCTAC AGCGATACGG CCAACTGCCG
AGCTGCCAGC CAGACGATCG TGCGCTGCTA GCCGATGGGG TTGTCGATCT ACTGGGGATT
AACTACTACC AGCCGCGCCG TATTCAGTGT CGCGACAGTC TGGTCAATCC TGATAGTCCG
TTTATGCCCG AATGGTTTTT CTCCAGCTAT GAGATGCCGG GACGAAAAAT GAATCCTTAT
CGCGGTTGGG AAATTTATGA ACCGGGTATT TATGACATTC TGACCAACCT GCGGGTGAAT
TATGGCAATC CGCGCTGCTT TATTTCGGAA AACGGCATGG GGGTGGAGAA CGAGCAGCGT
TTCGACGCCA ACGGCCAGAT TCAGGATGAT TACCGCATCG ATTTTGTCCG TGAACATCTG
AAGTATGTAC ACAAAGGCAT CGCGGAAGGC AGCAACTGCC TCGGCTACCA TATGTGGACG
TTTATCGATA ACTGGTCGTG GTCGAATGCC TACAAGAATC GCTATGGCTT TGTGCAGCTT
GATCTGGTAA CGCAGAAGCG CACGGTGAAG AAAAGCGGAG AATGGTTCGC GACTATAGCG
GCTGAGAATG GTTTTCAAGA CGTAACGTCG TAA
|
|---|
| Protein sequence | MHDHLQKDFR FPANFWWGSA SSAPQTEGES LNYGKSATVW DEWFATQPGR FHQQVGPADT
STFYQHWRED IALLKTLNHN TFRTSISWAR LIPDGVGEPN PQAVAFYNQV IDEMLAQGIT
PFINLFHFDM PMVMQRLGGW ENRAVVVAYA GYAATCFRLF GDRVKHWFTF NEPVVPVEGG
YLYDFHYPNV VDFKRAATVA YHTMLAHSLA VKAYREQSQG GEIGIILNLT PSYPRSQHPA
DVKAANIADL MFNRSFLDPA LRGEYPQELV DLLQRYGQLP SCQPDDRALL ADGVVDLLGI
NYYQPRRIQC RDSLVNPDSP FMPEWFFSSY EMPGRKMNPY RGWEIYEPGI YDILTNLRVN
YGNPRCFISE NGMGVENEQR FDANGQIQDD YRIDFVREHL KYVHKGIAEG SNCLGYHMWT
FIDNWSWSNA YKNRYGFVQL DLVTQKRTVK KSGEWFATIA AENGFQDVTS
|
|---|
| |