| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0012 |
|---|
| Symbol | |
|---|
| ID | 8130912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 13760 |
|---|
| End bp | 15202 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644863283 |
|---|
| Product | glycoside hydrolase family 1 |
|---|
| Protein accession | YP_003015611 |
|---|
| Protein GI | 253686421 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTTC AACAATTACC GAAAGACTTT CTGTGGGGCG GCGCGGTAGC GGCGCATCAA
GTTGAAGGTG GTTGGGATCA AGGTGGCAAA GGCGTCAGCA TCTGTGATGT CCTGTCCGGC
GGCGCCCACG GCGTTGATCG TGTGATTACC GATGGTGTAC AGCCTGGTGT CAGTTATCCG
AATCATCAGG CGGTGGAGTT CTATTCCCAC TATAAACAGG ACGTCGCCCT GTTCGCCGAA
ATGGGCTTTA AATGCTTCCG TACCTCGATT GCCTGGACGC GTATTTTCCC CAATGGCGAT
GAGCTGGAGC CGAATGAGGC AGGCCTGCAA TTCTATGATG ACCTGTTCGA TGAGCTGCTG
AAATACAACA TCGAACCAGT GATTACGCTG TCTCACTTCG AGATGCCGCA TCATTTGGTT
AAGCAGTACG GCGGTTGGCT GAACCGTAAA GTGGTGGATT TCTTTGTTCG CTACAGCGAA
GTGGTCATGA AACGTTACCA GTCCAAAGTG AAATACTGGA TGACTTTCAA TGAGATCAAC
AACCAGCGTA ACTGGCAGTA TCCGCTATTT GGCTACTGCT GTTCCGGCGT GATTTTTACC
GATCACGACA AGCCAGAGCA GGCGATGTAC CAAACGCTGC ACCACCAGTT TGTCGCCAGT
GCGAAAGTGG TGAAACTGGG TCATGAGATT AACCCGAACT TCAAAATTGG CTGCATGCTT
GCGCTGGTGC CGATCTACCC GTGGTCATGC CACCCGGATG ACGTGATGTT TGCACAGGAA
GCGATGCGTG AACGTCACCT GTTCGGCGAC GTGCAGTTGC GCGGTTACTA TCCGTCTTAC
ATCCTGAAAG AGTGGGCGCG AAAAGGCTAT CAGATTGATA TGCAACCGGA AGACGAACAG
ACGCTGCGCG ATGGTTGCAC GGACTATCTG GGCTTCAGCT ACTACATGAG CAGTGCGGTG
CAGCTGGCGG CAAAAGGCCA GAAAAAAGAA GATTCAATTA CGGGCTTTGA CGGCGGCGTG
AAAAACCCGC ATGTGAAGGC ATCGGAATGG GGCTGGCAGA TCGACCCGGT TGGCCTGCGC
TATACGCTGA ATAGCTTCTA CGAACGTTAT CAGAAACCGA TGTTCATCGT CGAAAACGGT
TTTGGCGCGG TAGACAAGGT GGAAGCCGAC GGCAGCATTA ATGATGATTA CCGCATCGAG
TACCTCAAAG CGCATATCGA TCAGATGAAG AAAGCCGTCG TGGAAGATGG CGTGGAGCTG
ATGGGCTATA CCCCGTGGGG CTGCATCGAC TGTGTGTCGT TCACCACCGG GCAGTACAGC
AAACGCTACG GTTTCATTTA CGTGGATAAA CACGACGATG GCACTGGTAC CTTCAAGCGC
TCGAAGAAAA AGAGCTTTGA CTGGTACAAG AAGGTGATTT CCAGCAACGG TGCCGAGCTA
TAA
|
|---|
| Protein sequence | MSVQQLPKDF LWGGAVAAHQ VEGGWDQGGK GVSICDVLSG GAHGVDRVIT DGVQPGVSYP
NHQAVEFYSH YKQDVALFAE MGFKCFRTSI AWTRIFPNGD ELEPNEAGLQ FYDDLFDELL
KYNIEPVITL SHFEMPHHLV KQYGGWLNRK VVDFFVRYSE VVMKRYQSKV KYWMTFNEIN
NQRNWQYPLF GYCCSGVIFT DHDKPEQAMY QTLHHQFVAS AKVVKLGHEI NPNFKIGCML
ALVPIYPWSC HPDDVMFAQE AMRERHLFGD VQLRGYYPSY ILKEWARKGY QIDMQPEDEQ
TLRDGCTDYL GFSYYMSSAV QLAAKGQKKE DSITGFDGGV KNPHVKASEW GWQIDPVGLR
YTLNSFYERY QKPMFIVENG FGAVDKVEAD GSINDDYRIE YLKAHIDQMK KAVVEDGVEL
MGYTPWGCID CVSFTTGQYS KRYGFIYVDK HDDGTGTFKR SKKKSFDWYK KVISSNGAEL
|
|---|
| |