Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0010 |
Symbol | |
ID | 8130910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 12098 |
End bp | 13411 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644863281 |
Product | PTS system, lactose/cellobiose family IIC subunit |
Protein accession | YP_003015609 |
Protein GI | 253686419 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAT TAACCGAGTC ATTATTCAGC GTTATCGAAA ACCGTATTAG CCCAATCGCG GCGAAACTTT CCAGCCAGCG TCATGTTGTT GCCATTAAAG ATGGGTTCAT TGCGTCAATG CCCTTTTTAA TTGTCGGCTC TTTTATGATG TTATTCGCTC ATCCGCCTTT TAGTCCGAAT AGTGAATGGG CTTTTGCGCA GTGGTGGCTG GGGATGGTGG AACGCCACGG CGAACAAATC ATGATGCCCT ACAATATGAC GATGGGCATC ATGGCGGTGT ATATCACCAG CGCTATCGCC TATAACCTGG CACAGAGCTA TAAAATGAAC GGTTTTATGG CCGCCAGCCT GGCGCTGATG TCGTTTATGG TCGTTGCAGC GCCGCAAATC GATAAAAGTC TGCCAGTTGG GTCGCTGGGG GGCGAGGGGA TTTTTACCGC GATTATCGTG GCGATCTATT CGACGGAGCT GATGCATTTT TTGCAGAAGC ACAATATTGG CATTCGCCTG CCGGAACAGG TACCGCCGAA AATCCGCCAG TCTTTCGATC TGCTCATCCC GATTCTTGCC ATTTTCCTGA CGCTGTTCCC GCTTAGCCTG TTCATGCAGA GCCAGTTCGG CATGCTGTTG CCGCAGGCGA TCATGGCCGT CTTCGCGCCG ATTATCTCGG CATCCGATTC GCTCCCTGCC ATCTTGATCG CGGTGCTGCT CTGCCACCTG CTGTGGTTTG CCGGGATTCA CGGTGCCGTT ATCGTCGGCG GCATTTTGCA GGCGTTCTGG CTGACCAACT TAGGAATCAA TCAGGAAGCA TTTAACGCGG GCGCACCGAT CACCAAAATT TTCATTGAGC CCTTCTGGCA GTTCTTCATT ACGGTGGGTG GATCGGGGGC GACCATGGGG CTGGTCTTTC TCTATCTGCG CAGCCGTTCT GCTCACCTTC GCTCCATCGG CAAGCTGGCC GTGGTGCCGA GCATGTTCAA CATCAACGAA CCGGTGATTT TTGGTTCACC CGTCGTGATG AACCCGCTGC TGTTCATCCC ATTTATTACC GCGCCGCTGG TGAACGCCAT CCTTGCCTAT ATCGCGTTAA AAACCGATTT GGTGCATCGC GTCATTTCTC TTGCGCCCTG GACAACGCCG GGCCCGATTG GCGCTGCCTG GTCTACGGGA TGGGACTGGC GTGCGGTGGT GTTGGTGGGG GTACTGATTG TCGTCTCATC CTTAATCTAT TACCCCTTCT TCAAAATGTA TGAACGTCAG TTGATCGAAC AAGAAGTGGG TACAGCAGAG GAGGCAGTCA GTGATGCTCG ATGA
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Protein sequence | MSKLTESLFS VIENRISPIA AKLSSQRHVV AIKDGFIASM PFLIVGSFMM LFAHPPFSPN SEWAFAQWWL GMVERHGEQI MMPYNMTMGI MAVYITSAIA YNLAQSYKMN GFMAASLALM SFMVVAAPQI DKSLPVGSLG GEGIFTAIIV AIYSTELMHF LQKHNIGIRL PEQVPPKIRQ SFDLLIPILA IFLTLFPLSL FMQSQFGMLL PQAIMAVFAP IISASDSLPA ILIAVLLCHL LWFAGIHGAV IVGGILQAFW LTNLGINQEA FNAGAPITKI FIEPFWQFFI TVGGSGATMG LVFLYLRSRS AHLRSIGKLA VVPSMFNINE PVIFGSPVVM NPLLFIPFIT APLVNAILAY IALKTDLVHR VISLAPWTTP GPIGAAWSTG WDWRAVVLVG VLIVVSSLIY YPFFKMYERQ LIEQEVGTAE EAVSDAR
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