Gene PC1_0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0010 
Symbol 
ID8130910 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp12098 
End bp13411 
Gene Length1314 bp 
Protein Length437 aa 
Translation table11 
GC content53% 
IMG OID644863281 
ProductPTS system, lactose/cellobiose family IIC subunit 
Protein accessionYP_003015609 
Protein GI253686419 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1455] Phosphotransferase system cellobiose-specific component IIC 
TIGRFAM ID[TIGR00359] phosphotransferase system, cellobiose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAAT TAACCGAGTC ATTATTCAGC GTTATCGAAA ACCGTATTAG CCCAATCGCG 
GCGAAACTTT CCAGCCAGCG TCATGTTGTT GCCATTAAAG ATGGGTTCAT TGCGTCAATG
CCCTTTTTAA TTGTCGGCTC TTTTATGATG TTATTCGCTC ATCCGCCTTT TAGTCCGAAT
AGTGAATGGG CTTTTGCGCA GTGGTGGCTG GGGATGGTGG AACGCCACGG CGAACAAATC
ATGATGCCCT ACAATATGAC GATGGGCATC ATGGCGGTGT ATATCACCAG CGCTATCGCC
TATAACCTGG CACAGAGCTA TAAAATGAAC GGTTTTATGG CCGCCAGCCT GGCGCTGATG
TCGTTTATGG TCGTTGCAGC GCCGCAAATC GATAAAAGTC TGCCAGTTGG GTCGCTGGGG
GGCGAGGGGA TTTTTACCGC GATTATCGTG GCGATCTATT CGACGGAGCT GATGCATTTT
TTGCAGAAGC ACAATATTGG CATTCGCCTG CCGGAACAGG TACCGCCGAA AATCCGCCAG
TCTTTCGATC TGCTCATCCC GATTCTTGCC ATTTTCCTGA CGCTGTTCCC GCTTAGCCTG
TTCATGCAGA GCCAGTTCGG CATGCTGTTG CCGCAGGCGA TCATGGCCGT CTTCGCGCCG
ATTATCTCGG CATCCGATTC GCTCCCTGCC ATCTTGATCG CGGTGCTGCT CTGCCACCTG
CTGTGGTTTG CCGGGATTCA CGGTGCCGTT ATCGTCGGCG GCATTTTGCA GGCGTTCTGG
CTGACCAACT TAGGAATCAA TCAGGAAGCA TTTAACGCGG GCGCACCGAT CACCAAAATT
TTCATTGAGC CCTTCTGGCA GTTCTTCATT ACGGTGGGTG GATCGGGGGC GACCATGGGG
CTGGTCTTTC TCTATCTGCG CAGCCGTTCT GCTCACCTTC GCTCCATCGG CAAGCTGGCC
GTGGTGCCGA GCATGTTCAA CATCAACGAA CCGGTGATTT TTGGTTCACC CGTCGTGATG
AACCCGCTGC TGTTCATCCC ATTTATTACC GCGCCGCTGG TGAACGCCAT CCTTGCCTAT
ATCGCGTTAA AAACCGATTT GGTGCATCGC GTCATTTCTC TTGCGCCCTG GACAACGCCG
GGCCCGATTG GCGCTGCCTG GTCTACGGGA TGGGACTGGC GTGCGGTGGT GTTGGTGGGG
GTACTGATTG TCGTCTCATC CTTAATCTAT TACCCCTTCT TCAAAATGTA TGAACGTCAG
TTGATCGAAC AAGAAGTGGG TACAGCAGAG GAGGCAGTCA GTGATGCTCG ATGA
 
Protein sequence
MSKLTESLFS VIENRISPIA AKLSSQRHVV AIKDGFIASM PFLIVGSFMM LFAHPPFSPN 
SEWAFAQWWL GMVERHGEQI MMPYNMTMGI MAVYITSAIA YNLAQSYKMN GFMAASLALM
SFMVVAAPQI DKSLPVGSLG GEGIFTAIIV AIYSTELMHF LQKHNIGIRL PEQVPPKIRQ
SFDLLIPILA IFLTLFPLSL FMQSQFGMLL PQAIMAVFAP IISASDSLPA ILIAVLLCHL
LWFAGIHGAV IVGGILQAFW LTNLGINQEA FNAGAPITKI FIEPFWQFFI TVGGSGATMG
LVFLYLRSRS AHLRSIGKLA VVPSMFNINE PVIFGSPVVM NPLLFIPFIT APLVNAILAY
IALKTDLVHR VISLAPWTTP GPIGAAWSTG WDWRAVVLVG VLIVVSSLIY YPFFKMYERQ
LIEQEVGTAE EAVSDAR