| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_4263 |
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| Symbol | trmE |
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| ID | 8120188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | - |
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| Start bp | 4809359 |
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| End bp | 4810723 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644854637 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_003006532 |
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| Protein GI | 251791811 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.226045 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCATA CCGATACCAT CGTTGCCCAA GCCACCCCGC CGGGACGCGG CGGCGTAGGT
ATTCTGCGTA TCTCCGGCCG GCAAGCTTCA GTGGTAGCGC AAGCCATACT GGGCAAGCTG
CCCAAACCGC GTTACGCCGA TTATTTGCCT TTCCACGACG CCGACGGCAG CGTGCTCGAT
CAAGGCATCG CCCTGTGGTT TCCCGGCCCG AACTCCTTTA CCGGCGAAGA CGTGCTGGAA
CTGCAAGGGC ACGGCGGCCC GGTGATTCTC GACCTGCTGC TCAAGCGCGT CGCGGCACAG
CCGGGCGTAC GCATCGCCCG CCCCGGCGAG TTCTCCGAAC GGGCATTTCT GAATGACAAA
CTGGATCTGG CGCAGGCCGA AGCGATTGCC GATCTGATTG ACGCCAGTTC CGAGCAGGCC
GCCCGTTCCG CCGTCAATTC GCTGCAGGGT GTCTTTTCTT CCCGCGTTCA TCAGCTGGTG
GAAGCACTCA CTCACCTTCG AATCTATGTG GAAGCGGCGA TCGATTTCCC CGATGAGGAG
ATCGATTTTC TCTCCGACGG CAAAATTGAA GCCATGCTCA ATGAAGTGAT AGGCGATTTG
GAGGCCGTAC GCGGCGAAGC GCGTCAGGGC AGCCTGTTGC GTGAAGGGAT GAAAGTGGTG
ATTGCCGGCC GGCCGAATGC CGGTAAATCC AGCCTGCTGA ATGCGCTGGC CGGGCGCGAT
GCCGCCATCG TCACCGATAT CGCCGGCACC ACCCGCGATG TACTGCGTGA ACATATTCAT
ATCGACGGTA TGCCGCTGCA TATCATCGAC ACCGCCGGGT TGCGCGAAGC CGGCGACGAA
GTAGAACGTA TTGGTATCGA GCGTGCCTGG CAGGAAATCG AGCAGGCCGA CCGGGTACTG
TTCATGGTGG ATGGCACCAC CACCGATGCC GTAGAGCCGG CGGCTATCTG GCCGGAATTC
ATGGCGCGAT TGCCGAGTCG GTTACCGATC ACCGTCGTGC GTAATAAAGC GGACGTCACC
GGCGAACCAC TGGGCATTGA AGAGGTAAAT ACTTACTCAC TTATCCGCCT TTCCGCCCGG
ACCGGCGACG GTGTAGACCT GCTGCGTGAC CACCTCAAAC AAAGCATGGG ATTTACCAGC
AACACCGAAG GGGGTTTTCT GGCCCGCCGC CGTCACTTGC AGGCGCTGGA ACAAGCGGCG
CAGCATCTGC AGCAAGGCCA CGAGCAACTG GTCGGTGCCT ACGCCGGTGA ACTGCTGGCC
GAAGAACTGC GGCTGGCACA GCAGGCGTTA AGTGAAATCA CCGGTGAATT CACCTCCGAC
GACCTGCTGG GGCGGATTTT TTCCAGTTTT TGCATCGGCA AGTAA
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| Protein sequence | MSHTDTIVAQ ATPPGRGGVG ILRISGRQAS VVAQAILGKL PKPRYADYLP FHDADGSVLD
QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRVAAQ PGVRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSAVNSLQG VFSSRVHQLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE AMLNEVIGDL EAVRGEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRD
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREAGDE VERIGIERAW QEIEQADRVL
FMVDGTTTDA VEPAAIWPEF MARLPSRLPI TVVRNKADVT GEPLGIEEVN TYSLIRLSAR
TGDGVDLLRD HLKQSMGFTS NTEGGFLARR RHLQALEQAA QHLQQGHEQL VGAYAGELLA
EELRLAQQAL SEITGEFTSD DLLGRIFSSF CIGK
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