Gene Dd1591_3977 details

Gene Information

• Locus tag: Dd1591_3977
• ID: 8117582
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 4496129
• End bp: 4496608
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 644854356
• Product: type VI secretion system effector, Hcp1 family
• Protein accession: YP_003006256
• Protein GI: 251791535
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAATT TAATCTATTT AACCATCGAA GGGAAAAACC AAGGTTTAAT TTCTTCCGGA 
TGTTCTAAAT TTGAATCCAT AGGTAATAAA TACCAGAAAT CACATGGCGA TGAAATATTT 
GTACTATCAT TTGAGCACGA CATGACAAGA GCGATGAATA TCAATCATAT GCCTATTTCG 
TTCACAAAGC TCATTGATAA ATCATCTCCA TTACTTGGTG TAGCGATAAC AGAAAATGAG 
GAACTCTCGT TGCACTTTAA ATTTTATAGA ACATCAGAAA CCGGCGGAGT TGAACTTTAC 
TATTCAATAA AAGCAAATAA AGCCTTTATT GTTAAACTTA GTGTTATCTA TCCCCACGCC 
ATAAATCATG CTGATAACCA ACCTGAAGAA CTCATAAGTA TAAAATACTC TGACATTCAG 
TGGAACCACC ACATTGCCAG AACATCAGGA TACAGTATAT GGGGAGAGAA TAGTTTCTAA 

 

Protein sequence

MANLIYLTIE GKNQGLISSG CSKFESIGNK YQKSHGDEIF VLSFEHDMTR AMNINHMPIS 
FTKLIDKSSP LLGVAITENE ELSLHFKFYR TSETGGVELY YSIKANKAFI VKLSVIYPHA 
INHADNQPEE LISIKYSDIQ WNHHIARTSG YSIWGENSF