| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3885 |
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| Symbol | rpoB |
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| ID | 8118842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | - |
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| Start bp | 4390147 |
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| End bp | 4394175 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644854256 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003006164 |
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| Protein GI | 251791443 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGC ATTCGTAAGG ATTTTGGGAA ACGTCCGCAA
GTGTTGGATA TCCCATATCT CCTTTCTATC CAGCTTGACT CGTTCCAGAA GTTTATCGAG
CAAGATCCGG AAGGTCAGTA TGGTCTGGAA GCTGCATTCC GTTCCGTATT CCCTATCTCA
AGTTACAGCG GTAATTCCGA GCTGCAGTAC GTGAGTTATC GCCTGGGTGA GCCGGTATTT
GACGTACAAG AGTGTCAAAT CCGCGGTGTG ACCTTCTCTG CGCCATTGCG CGTGAAGCTG
CGTCTGGTGA TCTACGAGCG CGAAGCGCCG GAAGGCACCG TTAAAGACAT CAAAGAACAA
GAAGTGTACA TGGGCGAGAT TCCGCTCATG ACCGACAACG GTACCTTTGT TATCAATGGT
ACTGAGCGTG TTATCGTTTC TCAGTTGCAT CGTAGTCCTG GCGTCTTCTT TGACAGCGAT
AAGGGTAAAA CCCACTCTTC CGGTAAGGTG CTGTATAACG CACGTATCAT TCCTTACCGT
GGTTCCTGGC TGGACTTTGA ATTCGACCCG AAAGACAACC TGTTTGTCCG TATCGACCGT
CGCCGTAAAC TGCCGGCTAC CATCATTCTG CGTGCATTGA ATTACTCCAC CGAAGAAATT
CTGGATCTGT TCTTCGATAA AGTGGTGTAT GAAATCCACA ACAACAAGCT GCAGATGGAA
CTGGTGCCTG AACGTCTGCG CGGTGAAACC GCCTCGTTCG ACATTGAAGC CGACGGCAAA
GTTTACGTTG AGAAAGGCCG CCGCATCACT GCGCGCCATA TCCGTCAGTT GGAAAAAGAC
GGTATCGAAC GTATTGAAGT ACCGGTTGAA TACATCGCAG GCAAAGTGCT GGCGAAAGAC
TATGTGGATG AAAGCACCGG TGAAGTGATC GCGATGGCGA ACATGGAACT GTCGCTGGAT
CTGCTGGCCA AACTGAGTCA GGCTGGTCAC AAGCGTATTG ACACGCTGTT CACCAACGAT
CTGGATCACG GCCCGTACAT GTCCGAGACC GTGCGTGTCG ATCCGACCAA CGATCGCTTG
AGCGCGCTGG TTGAGATCTA CCGCATGATG CGTCCTGGCG AGCCGCCGAC ACGCGAAGCC
GCTGAGACTC TGTTCGAAAA TCTGTTCTTC TCTGAAGATC GTTACGATCT GTCCGCGGTT
GGCCGTATGA AGTTCAACCG TTCTCTGCTG CGCGAAGAAA TTGAAGGCTC CGGCATTCTG
AGCAAGGCAG ACATTATCGA TGTGATGAAA AAACTCATCG ATATCCGTAA CGGTAAGGGT
GAAGTCGACG ATATCGACCA TTTGGGCAAC CGTCGTATCC GTTCTGTCGG TGAAATGGCG
GAAAACCAGT TCCGCGTCGG TCTGGTGCGT GTTGAGCGTG CGGTCAAAGA GCGTCTGTCT
CTGGGCGACC TGGACACGCT GATGCCGCAG GACATGATCA ACGCCAAGCC GATTTCCGCA
GCGGTGAAAG AGTTCTTCGG TTCCAGCCAG CTGTCTCAGT TTATGGACCA GAACAACCCG
CTGTCCGAGA TTACGCACAA ACGCCGTATC TCCGCATTGG GCCCAGGCGG TCTGACCCGT
GAGCGCGCCG GCTTTGAAGT GCGTGACGTA CACCCGACTC ACTACGGTCG TGTATGTCCT
ATCGAAACGC CGGAAGGTCC GAACATCGGT CTGATCAACT CGCTGTCCGT GTATGCACAG
ACTAACGAGT ATGGTTTCCT GGAAACCCCG TACCGCCGTG TACGCGATGG CGTGGTAACC
GACGAAATTC ATTACCTGTC GGCGATCGAA GAAGGTAACT ACGTTATTGC CCAGGCGAAC
ACCAACCTGG ATGACGAAGG CCACTTCATC GATGAATTGG TCACCTGCCG TAGCAAAGGC
GAATCCAGCT TGTTCAGCCG CGATCAGGTT GACTACATGG ACGTTTCCAC CCAACAGGTG
GTCTCCGTGG GCGCCTCTCT GATCCCGTTC CTGGAACACG ATGACGCCAA CCGCGCCCTG
ATGGGTGCGA ACATGCAACG TCAGGCCGTG CCGACCCTGC GTGCCGACAA GCCGCTGGTT
GGTACGGGTA TGGAACGTGC TGTTGCCGTT GACTCCGGTG TAACCGCGGT TGCTAAACGC
GGCGGTACCG TGCAGTACGT CGATGCTTCT CGTATCGTTA TCAAAGTTAA CGAAGAAGAG
ATGTATCCAG GCGAAGCGGG CATCGATATC TACAACCTGA CCAAATATAC CCGTTCCAAC
CAGAACACCT GTATCAACCA GATGCCGTGT GTGTCGCTGG GTGAGCCGGT TGAGCGCGGC
GACGTGCTGG CTGACGGCCC GTCTACCGAC CTCGGCGAAC TGGCGCTCGG TCAGAACATG
CGCGTGGCGT TCATGCCGTG GAACGGTTAC AACTTCGAAG ACTCCATCCT CGTTTCCGAG
CGTGTAGTAC AGGAAGACCG TTTTACTACC ATCCACATTC AGGAACTGGC GTGCGTGTCT
CGCGACACCA AGCTGGGGCC GGAAGAGATC ACCGCCGACA TCCCGAACGT GGGTGAAGCG
GCACTCTCCA AGCTGGATGA ATCCGGTATC GTTTACATCG GTGCGGAAGT GACCGGTGGC
GACATTCTGG TCGGTAAAGT GACGCCGAAA GGCGAAACTC AGCTGACGCC GGAAGAGAAA
CTGCTGCGTG CGATCTTCGG TGAGAAGGCG TCTGACGTGA AAGACTCTTC TCTGCGTGTG
CCGAACGGCG TTTCCGGTAC GGTTATCGAC GTGCAGGTCT TTACCCGCGA TGGCGTGGAA
AAAGACAAGC GTGCGTTGGA AATCGAAGAA ATGCAGCTTA AGCAGGCCAA GAAAGACCTG
ACTGAAGAAC TGCAGATTCT GGAAGCCGGT CTGTTTGCCC GTATCCATGA TGTGCTGGTT
GCCGGTGGCG TTGAAGCCGA CAAACTGGAC AAGCTGCCGC GTGAGCGTTG GCTGGAGCTG
GGTCTGACCG ACGAAGAGAA GCAGAATCAG CTGGAGCAGT TGGCTGAGCA GTACGACGAG
CTGAAACACG AATTCGAGAA GAAACTCGAA GCTAAACGCC GCAAAATCAC CCAAGGTGAT
GATCTGGCGC CGGGCGTGCT GAAGATCGTT AAGGTGTATC TGGCGGTTAA ACGTCAGATC
CAGCCGGGTG ACAAGATGGC AGGTCGCCAC GGTAACAAGG GTGTTATCTC CAAGATCAAC
CCGATCGAAG ATATGCCTTA CGACGAGAAC GGCACGCCGG TCGACATCGT ACTGAACCCG
CTGGGCGTAC CGTCACGTAT GAACATCGGT CAGATTCTGG AAACCCACCT GGGTATGGCG
GCGAAAGGCA TCGGCGACAA AATCAACGCC ATGCTCAAGC AGCATCAGGA AGTGGCCAAA
CTGCGTGAGT TCATCCAGCG CGCTTATGAC CTGGGTAACG ATGTACGCCA GAAAGTCGAC
CTGAACACCT TCAGCGATGA AGAAGTGCTG CGTCTGGCGG AAAATCTGAA GAAAGGTATG
CCGATCGCCA CGCCGGTGTT CGACGGTGCC AAGGAAAACG AGATCAAAGA GTTGCTGAAA
CTCGGCGATC TGCCGACTTC CGGTCAGATT ACGTTGTTCG ACGGCCGTAC TGGCGAGCAG
TTCGAGCGTC CGGTTACCGT GGGCTACATG TACATGCTGA AACTGAACCA CTTGGTGGAT
GACAAGATGC ATGCCCGTTC TACCGGCTCT TACAGCCTGG TTACCCAGCA GCCGTTGGGT
GGTAAGGCGC AGTTCGGTGG TCAGCGCTTC GGTGAGATGG AAGTGTGGGC GCTGGAAGCT
TACGGCGCAG CCTATACCCT GCAGGAAATG CTGACGGTGA AATCCGATGA CGTGAACGGC
CGTACCAAGA TGTATAAGAA CATCGTGGAT GGCGATCACC GGATGGAACC GGGTATGCCG
GAGTCCTTCA ACGTATTGTT GAAAGAAATC CGCTCCCTGG GTATCAACAT CGAGCTGGAA
GAAGAGTAA
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| Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQYGLE AAFRSVFPIS
SYSGNSELQY VSYRLGEPVF DVQECQIRGV TFSAPLRVKL RLVIYEREAP EGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALNYSTEEI LDLFFDKVVY EIHNNKLQME
LVPERLRGET ASFDIEADGK VYVEKGRRIT ARHIRQLEKD GIERIEVPVE YIAGKVLAKD
YVDESTGEVI AMANMELSLD LLAKLSQAGH KRIDTLFTND LDHGPYMSET VRVDPTNDRL
SALVEIYRMM RPGEPPTREA AETLFENLFF SEDRYDLSAV GRMKFNRSLL REEIEGSGIL
SKADIIDVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR
ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRDGVVT
DEIHYLSAIE EGNYVIAQAN TNLDDEGHFI DELVTCRSKG ESSLFSRDQV DYMDVSTQQV
VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR
GGTVQYVDAS RIVIKVNEEE MYPGEAGIDI YNLTKYTRSN QNTCINQMPC VSLGEPVERG
DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS
RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDSSLRV PNGVSGTVID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL
TEELQILEAG LFARIHDVLV AGGVEADKLD KLPRERWLEL GLTDEEKQNQ LEQLAEQYDE
LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN
PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGDKINA MLKQHQEVAK
LREFIQRAYD LGNDVRQKVD LNTFSDEEVL RLAENLKKGM PIATPVFDGA KENEIKELLK
LGDLPTSGQI TLFDGRTGEQ FERPVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GDHRMEPGMP
ESFNVLLKEI RSLGINIELE EE
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