| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3748 |
|---|
| Symbol | |
|---|
| ID | 8120747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 4238994 |
|---|
| End bp | 4241132 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644854116 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | YP_003006028 |
|---|
| Protein GI | 251791307 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAG TAGTGATTAA ACGGGACGGA TGTCAGGTAC CTTTTGACGA AAACCGAATC
AATGACGCAG TCATCAAAGC GGCGAAAGCC GCCAACGTGG ATGACGCGGA CTACTGTGCC
ACCGTCGCCG GCGCCGTCGC TCAGCAGATG CAGGGAAAAG CGCGTGTAGA TATCCGCGAG
ATCCAAAATG CGGTGGAAAA TCTGCTGATG TCCGGCAAAT ACAAGCAACT GGCGCGCACC
TATATCGAAT ACCGCCACGA CCGCGATGTC GCTCGCGAGC GTCAGGGGCG GTTGAATCAG
GAAATCCGCG GGCTGGTGGA GCAGAGTAAT GTTGCCCTGC TGAACGAGAA CGCCAATAAA
GACAGTAAAG TCATTCCCAC CCAGCGCGAC CTGCTGGCAG GGATTGTCGC CAAACATTAC
GCCAAACAGC ATATTCTGCC GCGCGACGTG GTGCTGGCCC ACGAACGCGG CGAGATTCAC
TACCACGACC TCGACTATTC GCCGTTCTTC CCGATGTTCA ACTGTATGCT GATTGATCTC
AACGGCATGT TGACGCAAGG TTTCAAGATG GGCAACGCGG AAATCGAGCC GCCGAAGTCT
ATCTCCACCG CCACGGCGGT CACCGCGCAG ATCATCGCGC AAGTCGCCAG TCACATCTAT
GGCGGCACCA CCATCAATCG GATTGATGAA ATTCTGGCGC CGTTCGTTAC CGCCAGCCAC
GAGAAACATT GCGCCGTGGC CCGCGAATGG CAGATCCCGG ATGCCGAAAG CTACGCCCGC
AGCCGTACCG AGAAAGAGTG CTACGACGCC TTCCAGTCGC TGGAGTATGA AGTCAACACC
CTGCACACCG CCAACGGCCA GACGCCGTTC GTCACCTTTG GTTTCGGACT GGGCACCAGT
TGGCAGTCGC GGTTGATTCA GCAATCCATC CTGCGTAATC GCATCGCCGG GCTTGGCAAA
AATCATAAGA CGGCGGTGTT CCCAAAACTG GTGTTCGCCA TCCGCGACGG CGTTAACCAT
AAACCGGGCG ACGCGAATTA CGACATCAAG CAACTGGCGC TGGAGTGTGC CAGTAAGCGC
ATGTACCCGG ATATCCTCAA TTACGATCAA GTAGTGGAAG TCACCGGTTC GTTCAAGACG
CCGATGGGTT GCCGCAGTTT CCTTGGCGTG TATGAAGAAA ACGGTGAGCA GATCCACGAC
GGCCGCAATA ATTTGGGCGT CATCAGCCTT AACCTGCCGC GTATCGCGCT GGAAGCCCAC
GGCGATGAAG CGCGCTTCTG GCAATTGCTG GATCAGCGCC TGCTGCTGGC GAAAAAGGCG
CTGATGACGC GTATCGCCCG GCTGGAAAAT GTAAAAGCGC GCGTAGCGCC TATACTTTAT
ATGGAAGGGG CCTGCGGAGT ACGCCTGAAG GCGGACGACA ATATCGCCGA GATTTTCAAG
AACGGCCGCG CGTCCATTTC GCTGGGTTAT ATCGGGGTTC ACGAAACCAT CAACGCCTTG
TTCAGCAATC AGGTTCATGT GTTTGATGAT GACACCCTGC GGCAGAAAGC GGTGGCGATC
GTTGCCCGTT TGAAAGCCGC CACCGAAAGC TGGAAGGAAG AAACGGGTTA CGGTTTCAGT
CTGTACAGTA CGCCGAGCGA AAACCTGTGC GACCGTTTCT GCCGTCTGGA TACTGCTGAA
TTCGGCGTCG TAGCCGGCGT TACCGACAAA GGTTACTACA CCAACAGCTT CCATCTCGAC
GTGGAGAAAA AGGTCAATCC GTACCAGAAG ATCGATTTTG AGGCCCCTTA CCCGCCGCTG
GCGAATGGCG GTTTTATCTG TTACGGCGAG TATCCCAATC TGCAGCACAA CCTTAAGGCG
CTGGAAGACG TGTGGGACTA CAGCTACACC CGCGTTCCCT ATTACGGCAC CAATACGCCG
ATCGACGAGT GCTACGAGTG CGGCTATAAC GGCGAGTTTA CCTGCACCAG CAAAGGCTTC
ACCTGCCCGC AGTGCGGTAA TCACGACGCT TCGCGCGTCT CGGTAACACG CCGGGTATGC
GGCTATCTGG GCAGCCCGGA TGCGCGTCCG TTCAACGCCG GTAAGCAGGA AGAGGTTAAA
CGCCGGATAA AACACCTTGC CAGTGGGCAA CTGGGCTGA
|
|---|
| Protein sequence | MKPVVIKRDG CQVPFDENRI NDAVIKAAKA ANVDDADYCA TVAGAVAQQM QGKARVDIRE
IQNAVENLLM SGKYKQLART YIEYRHDRDV ARERQGRLNQ EIRGLVEQSN VALLNENANK
DSKVIPTQRD LLAGIVAKHY AKQHILPRDV VLAHERGEIH YHDLDYSPFF PMFNCMLIDL
NGMLTQGFKM GNAEIEPPKS ISTATAVTAQ IIAQVASHIY GGTTINRIDE ILAPFVTASH
EKHCAVAREW QIPDAESYAR SRTEKECYDA FQSLEYEVNT LHTANGQTPF VTFGFGLGTS
WQSRLIQQSI LRNRIAGLGK NHKTAVFPKL VFAIRDGVNH KPGDANYDIK QLALECASKR
MYPDILNYDQ VVEVTGSFKT PMGCRSFLGV YEENGEQIHD GRNNLGVISL NLPRIALEAH
GDEARFWQLL DQRLLLAKKA LMTRIARLEN VKARVAPILY MEGACGVRLK ADDNIAEIFK
NGRASISLGY IGVHETINAL FSNQVHVFDD DTLRQKAVAI VARLKAATES WKEETGYGFS
LYSTPSENLC DRFCRLDTAE FGVVAGVTDK GYYTNSFHLD VEKKVNPYQK IDFEAPYPPL
ANGGFICYGE YPNLQHNLKA LEDVWDYSYT RVPYYGTNTP IDECYECGYN GEFTCTSKGF
TCPQCGNHDA SRVSVTRRVC GYLGSPDARP FNAGKQEEVK RRIKHLASGQ LG
|
|---|
| |