Gene Dd1591_3671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd1591_3671 
SymbolhsdR 
ID8117502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya zeae Ech1591 
KingdomBacteria 
Replicon accessionNC_012912 
Strand
Start bp4159901 
End bp4163425 
Gene Length3525 bp 
Protein Length1174 aa 
Translation table11 
GC content58% 
IMG OID644854045 
Producttype I restriction enzyme EcoKI subunit R 
Protein accessionYP_003005958 
Protein GI251791237 
COG category[V] Defense mechanisms 
COG ID[COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAACAGA CCGCACCCCA GCCTGCGGGC AATTTTGGCT TTCTTGCCGA GCATGACCCT 
CTCTTCGCCC AAATTGCGGC GGCGGCCGAG CAAGCCTTTT ACAGCGACCC CAACACCACA
CTGATCAAGC TACGCCAGTT AGGCGAAGCG CTGGCGCAGC ACCTTGCTAC GTTATCCGGC
ATCACGTTTG ATGAAAAAAC CAAACAGGTG GACCTGCTTT ATCAACTGAA CCGGGAATTA
CAGCTGGAAC CCACGGTGCG GGAGCTCTTC CATATCCTGC GGATGGAAGG CAACCGGGCG
ACACACCACT TCAGAACCCA GCATAAAGAA GCGATGGATG GGCTTAAAGT CGCCCGTTCA
CTGGCTATCT GGTTCCACCG TTCCTTGGGT AAACAAGGGG CGGATTTCAA AGCCGGGCCA
TTTGTTCCAC CGTCCGACCC CAGCGCACAA CTGCGTCAGT TGCAGACAGA AATCGAAACA
CTGAAAAACG ACCTGCTGTC AGCCAGTATC CAGCTCGAAT CCAGCCAGCA ATTGCAGCTA
TTACTGGGTA AGGAAAAAGC CGAATACGAA GCACTGGCAC TGGAGATGGA TCAGGAAGCC
AGAGCGTTGG CGAAACAGGC GCAAGCCCAT GCCGCCGAAC TACAGCAACT CCAGCAAGAC
TACGAAAGCA GGCTCAGAAC GTTACAAGCG CAACTGACCG CCAAAAATGA GCAACAGCGC
AACCAGCAAA AGCAGCGCGC CGCGCGACAA ACCCGTCAGG CCAGCCAAAA GATTACGCTG
ACCGAAGAAC TGACGCGCAT TCTTATCGAT CAGTCCTTAA ACGAGGCGGG CTGGCAAACC
GACAGCCAGA CGCTCAGTTG GGTGAAAGGC GCCCGTCCGG AAAAAGGCGT GAACAAAGCG
ATTGCCGAAT GGCCAACGCG CCACAACGGT GAGAAAGGCC GTGCCGATTA TGTGCTGTTT
TATGGGCTCA CCCCCATCGC CGTGGTGGAA GCCAAACGGC AGAATGAAAA CGTCGCCGGT
AAAATTCCGC AGGCAGAGCG CTACAGCAAA GGCTTTCAGG TAGAGCCCCC GTTAACCGCC
GCCTGGGAAC TGGAAGGGCG CAGCATCGCC TGGGCCGACG ACACAGAAGG GCATTACCAC
ATCCCTTTTG TTTACTCCTG CAACGGCCGC GCCTACCTAG CGCAACTGGC GGAACAATCC
GGCACCTGGT TTCGGGATGT ACGCGAGCCC GGCAACCTGC GGCGTCCGCT GCCGCAATTT
CACACCCCGG AAGGGCTGCT TGACCTGCTC AAACGCAGCA GGCAACAAGC CGAGGAAAAA
CTCAGCCAAG AAGGGTTGTC TTATCTGCGT CTGCGTGAAT ATCAGGAACG TGCGATCACC
GCGGTGGAAA CCACGCTGGC GCAGAACATC CGCACCGCCC TGCTGGCGAT GGCGACCGGC
ACCGGCAAAA CACGCACCAT CATCGGCCTG ATTTACCGCT TTCTGAAAAC CGAGCGCTTC
AAGCGCATTC TGTTTTTGGT TGATCGCACC GCACTGGGCA AACAGGCCAC CGAAAACTTC
AAAGAAACCA CGCTGGAACA AAACCAGTCC TTGTCGCAAA TCTACAACAT CGCGGAACTG
GGCGACATGG CCCCGCAGGC GGAAACCCGC GTGCAGGTCG CCACGGTGCA GGCGATGGTC
AGCCGGGTGT TTGCCAGCGA CACCCCGCCG CCAATCGACC AGTACGACTG CATCATTGTG
GATGAAGCCC ACCGGGGTTA CACGCTCGAT CAGGAAATGA CCGAAGGTGA GCTTGCCACC
CGCGACGCCG CCCAGTATCT CTCCAGCTAC CGCCGGGTGC TGGATTACTT TGATGCGGTA
AAAATAGCGT TGACCGCCAC ACCGGCCAAA CACACCAGCG ACATCTTTGG CCGCCCGGTG
TTTGTTTATT CTTACCGGGA AGCCGTCGCT GATGACTGGC TGATCGACTA CGAACCGCCG
ATTCGCTACC TGACACAGCT CAACCAGCAC GGTATCCATT TCGAAAAGGG CAGCCAGGTC
CGCGCGATCA ATATCGACAC TGGTGAGTTG GAAATAGACC AGTTGGAAGA CGACCTGCAT
TTTGATGTTG ATGCGTTTAA CCGCCGGGTC ATCAACGAAA ACTTCAACAG CGTTATCTGC
AACGAACTGG TCAAAGAGCT TGACCCATTT GGCGAAGGCA AAACCCTGAT TTTCTGCGCC
ACCGACAAAC ACGCCGATAT GGTCAAACGC CTGCTGGATG AAGCGTTCAC CGCCATCTAT
CCCGACTACA ATCAGGCGGC GGTGGAGAAA ATCACCGGCA AAAGCGACAA AGTCGATACG
CTAATCAGCC GTTATAAAAA CGAGCGCTAC CCTAACATCG CCATCACGGT GGACCTGCTC
ACCACCGGCA TTGACGTGCC GAAAATCAGC AACCTGGTGT TTATGCGCCG CGTGCGTTCG
CGCATCCTGT TTGAACAGAT GATCGGCCGC GCCACCCGCC GCTGCGACAA CATAGGCAAA
ACCGTATTCC GTGTTTACGA CCCGGTGGAT ATCTTCGAAG CGCTGCACGA CGCCAACACC
ATGAAACCGT TGGTCAAAAA CCCCGACATC ACGCTGGAAC AACTGGTGCG GGAACTGACC
GACGCCGAGC TACTGGAAAC CGCGCTCGCC AGCCCCGGTG AACAAGCGGG AGAAAACCAG
GCCGATGCGG TATTAACCCA CCTCAGCCAG AAACTGATGC GGGTGTTACG CAAAGCGGAA
AAGCGCGCCG AAACCCAACC ACAGGTCAGG CAAAAGCTCG ACGAGCTGGA GCAGTTGTGG
GGCATTGCGC CCAAAAACCT GCATCAGCAC CTGCACCACA TCGGGCCGCG TCAGGCTGCC
GGGTTCCTGC GCCGGCACAG TAACCTGACG ACCCAGCTCA ACGACGTCGC CCATCTGCTG
GGCAGCGATT ACCGCCCGGT CATCTCCGAG CACCACGACG CCTTGCTCGA GCGCCACCAG
TCTTACGGCA CCCATTCACG GCCGGAAGAT TACCTCAACA GCTTCAACGC GTTCATTCAA
ACCCAGCTTA ACCAGTCTGT GGCGCTTGCC GTGGTGGTCA ACAAACCGCG CGACCTCACC
CGCGAGCAGT TGAAAGAAAT CCGCCTCCTG CTCGACAACG CCGGTTATTC GGAGACCCAC
CTGCAAACGG CGGAGCGCAA TCAGAGCAGT CAGGATATCG CCGCCAGCAT CATCGGGCAT
ATTCGCCGGG CGGCCATCGG CGAGCCGTTG ATCCCGTTCG AACAGCGTGT CGATCAGGCA
ATGGCGAAAA TCTACCGGCT GCATAACTGG AGCCCGGTGC AACGCAACTG GCTGCAACGG
CTGGCCAAAC AGCTGACGTT CGAAGTGGTG CTGGACCGGC CGACCCTCAA CCGCTGCTTT
GCCACCACCG GTGGCGTCAA AGGGCTGGAC AAACTGCTGG ACCAGCATCT GGACGAGGTG
CTAAACACCC TCGGCGATGC ACTCTGGCCC CCCAAAAGCG CCTGA
 
Protein sequence
MKQTAPQPAG NFGFLAEHDP LFAQIAAAAE QAFYSDPNTT LIKLRQLGEA LAQHLATLSG 
ITFDEKTKQV DLLYQLNREL QLEPTVRELF HILRMEGNRA THHFRTQHKE AMDGLKVARS
LAIWFHRSLG KQGADFKAGP FVPPSDPSAQ LRQLQTEIET LKNDLLSASI QLESSQQLQL
LLGKEKAEYE ALALEMDQEA RALAKQAQAH AAELQQLQQD YESRLRTLQA QLTAKNEQQR
NQQKQRAARQ TRQASQKITL TEELTRILID QSLNEAGWQT DSQTLSWVKG ARPEKGVNKA
IAEWPTRHNG EKGRADYVLF YGLTPIAVVE AKRQNENVAG KIPQAERYSK GFQVEPPLTA
AWELEGRSIA WADDTEGHYH IPFVYSCNGR AYLAQLAEQS GTWFRDVREP GNLRRPLPQF
HTPEGLLDLL KRSRQQAEEK LSQEGLSYLR LREYQERAIT AVETTLAQNI RTALLAMATG
TGKTRTIIGL IYRFLKTERF KRILFLVDRT ALGKQATENF KETTLEQNQS LSQIYNIAEL
GDMAPQAETR VQVATVQAMV SRVFASDTPP PIDQYDCIIV DEAHRGYTLD QEMTEGELAT
RDAAQYLSSY RRVLDYFDAV KIALTATPAK HTSDIFGRPV FVYSYREAVA DDWLIDYEPP
IRYLTQLNQH GIHFEKGSQV RAINIDTGEL EIDQLEDDLH FDVDAFNRRV INENFNSVIC
NELVKELDPF GEGKTLIFCA TDKHADMVKR LLDEAFTAIY PDYNQAAVEK ITGKSDKVDT
LISRYKNERY PNIAITVDLL TTGIDVPKIS NLVFMRRVRS RILFEQMIGR ATRRCDNIGK
TVFRVYDPVD IFEALHDANT MKPLVKNPDI TLEQLVRELT DAELLETALA SPGEQAGENQ
ADAVLTHLSQ KLMRVLRKAE KRAETQPQVR QKLDELEQLW GIAPKNLHQH LHHIGPRQAA
GFLRRHSNLT TQLNDVAHLL GSDYRPVISE HHDALLERHQ SYGTHSRPED YLNSFNAFIQ
TQLNQSVALA VVVNKPRDLT REQLKEIRLL LDNAGYSETH LQTAERNQSS QDIAASIIGH
IRRAAIGEPL IPFEQRVDQA MAKIYRLHNW SPVQRNWLQR LAKQLTFEVV LDRPTLNRCF
ATTGGVKGLD KLLDQHLDEV LNTLGDALWP PKSA