| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3489 |
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| Symbol | |
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| ID | 8117957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | + |
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| Start bp | 3961218 |
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| End bp | 3963053 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644853864 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_003005779 |
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| Protein GI | 251791058 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0495804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGCAAA ACCCGCAGTC ACAGCTCAAG CTACTTGTCA CCCGTGGTAA GGAGCAAGGC
TACCTGACCT ATGCTGAGGT CAATGACCAT CTGCCGGAAG ATATCATCGA CTCCGATCAG
ATCGAAGACA TCATCCAGAT GATTAACGAC ATGGGCATCC AGGTGATGGA AGAAGCACCG
GATGCCGATG ATCTCATGCT GGCTGAAAAT ACCGCCGATG AAGACGCTGC TGAAGCAGCG
GCTCAGGTAT TATCCAGCGT CGAATCTGAG ATTGGCCGTA CGACCGATCC GGTTCGTATG
TACATGCGTG AAATGGGCAC CGTCGAACTG CTGACCCGTG AAGGGGAAAT CGATATCGCC
AAGCGAATCG AAGACGGTAT CAATCAGGTT CAGTGCTCTG TTGCCGAATA CCCGGAAGCG
ATCACCTATC TGTTGGAACA ATACGATCGC GTTGAAGCCG GAGAAAGCCG CCTGTCCGAT
CTGATAACAG GCTTTGTCGA TCCGAACGCC GAAGAGGATT TGGCACCGAA TGTCGCTCCT
GAAAACGCCG AACTGGCCGA TGACGGCATC GACGATGACG ACGACGAAAA CGAAGAAGAC
GAAGACGATA CCGACGATGA CAACAGCATC GACCCGGAGC TGGCGCGTCA GAAATTCACC
GAACTGCGCG ATCAGTACGA AGCGACCCGC GTCAGCATCA AGGCGCATGG CCGTAGCCAC
CCGTCGGCGA TCGAAGAAAT CAACAAACTG TCTGAGGTAT TCAAGCAGTT CCGTCTGGTG
CCAAAACAGT TCGACCTGCT GGTAAATAAC ATGCGTTCCA TGATGGATCG CGTGCGTACA
CAGGAACGCC AGATCATGAA GCTGTGCGTT GAACTGTGCA AAATGCCGAA GAAAAACTTT
GTAACGTTGT TTACCGGCAA CGAAACCAAC AGCAAGTGGT TCGAAGCGGC GCTTTCCATG
GGTAAACCTT GGTGTGAAAA GCTGCGCGAA GTTGAAGATG ACGTACATCG TAGCCTGCAA
AAACTGCAGC AGATCGAAGA AGAAACCGGT CTGACTATCG AGCAGGTGAA GGATATCAAC
CGCCGCATGT CCATCGGTGA GGCCAAAGCT CGCCGCGCCA AGAAAGAGAT GGTGGAAGCG
AACCTGCGTC TGGTGATTTC CATCGCCAAG AAATACACCA ACCGCGGTCT ACAGTTCCTC
GATCTGATTC AGGAAGGCAA CATCGGCCTG ATGAAGGCGG TAGACAAATT CGAATACCGC
CGGGGTTACA AATTTTCTAC CTATGCCACT TGGTGGATCC GTCAGGCGAT TACCCGCTCT
ATCGCGGATC AGGCGCGCAC CATCCGTATT CCGGTGCACA TGATTGAGAC GATTAACAAA
CTCAATCGTA TTTCCCGCCA GATGCTGCAG GAAATGGGCC GTGAGCCGAC GCCGGAAGAG
CTGGCCGAGC GTATGCTGAT GCCGGAAGAT AAGATCCGTA AAGTCTTGAA GATCGCCAAA
GAGCCTATCT CGATGGAAAC CCCGATCGGT GATGATGAAG ATTCGCATCT GGGTGATTTC
ATCGAAGATA CCACGCTGGA GCTGCCGCTG GATTCCGCTA CTTCAGAAAG CCTGCGCTCC
GCCACCCACG ACGTACTGGC TGGCTTGACC GCCCGTGAAG CCAAGGTACT GCGTATGCGT
TTTGGTATCG ACATGAATAC CGACCACACA CTGGAAGAAG TCGGCAAACA GTTCGACGTT
ACCCGTGAGC GTATTCGTCA GATCGAAGCG AAAGCACTGC GTAAATTGCG CCATCCGAGC
CGCTCTGAAG TACTGCGCAG TTTCCTGGAT GACTGA
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| Protein sequence | MEQNPQSQLK LLVTRGKEQG YLTYAEVNDH LPEDIIDSDQ IEDIIQMIND MGIQVMEEAP
DADDLMLAEN TADEDAAEAA AQVLSSVESE IGRTTDPVRM YMREMGTVEL LTREGEIDIA
KRIEDGINQV QCSVAEYPEA ITYLLEQYDR VEAGESRLSD LITGFVDPNA EEDLAPNVAP
ENAELADDGI DDDDDENEED EDDTDDDNSI DPELARQKFT ELRDQYEATR VSIKAHGRSH
PSAIEEINKL SEVFKQFRLV PKQFDLLVNN MRSMMDRVRT QERQIMKLCV ELCKMPKKNF
VTLFTGNETN SKWFEAALSM GKPWCEKLRE VEDDVHRSLQ KLQQIEEETG LTIEQVKDIN
RRMSIGEAKA RRAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL MKAVDKFEYR
RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK LNRISRQMLQ EMGREPTPEE
LAERMLMPED KIRKVLKIAK EPISMETPIG DDEDSHLGDF IEDTTLELPL DSATSESLRS
ATHDVLAGLT AREAKVLRMR FGIDMNTDHT LEEVGKQFDV TRERIRQIEA KALRKLRHPS
RSEVLRSFLD D
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