Gene Dd1591_3389 details

Gene Information

• Locus tag: Dd1591_3389
• ID: 8119925
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 3857525
• End bp: 3859417
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 644853763
• Product: polysaccharide biosynthesis protein CapD
• Protein accession: YP_003005684
• Protein GI: 251790963
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTAAAC TTATTCCGCT TTTGCTTAAC GCAGAGCGCA CAACCAAACG CATAGTGACA 
GTAAGCTATG ACATTATCGC GATTGTTTTT TCACTGTATC TGGCCGTCGC CGTCCGTTTA 
GGTACCGCCG AATTCCCGGT TGGTTATGCT GAAATAGCCA GCGTCATCGT CACGTTATCC 
ATCACAATCC TGGTCTTCAT ACGTTGCGGT ATGTATCGCG CCGTGTTGCG CTATATGATG 
TTGCCGGCAA TGGGGTATGT TTTTCTATCA GTTATTCTCT CCGCCATCAG TCTGGCACTG 
AGTAGCTTCT TTTTTCAGTC TTTTGTCCCG CGTAGCGTGC CCTTTATCTA TGCGGGCTTA 
GCGACGCTCG CGCTGGGTAG CCCGCGCGTA CTGATCCGAA CCTTCTACTA TCACTACTAT 
AAGCGTCAGA AACCGAACGT TTTTATCTAT GGAGCAGGCG CTACCGGACG AGACCTACTT 
TACGCGTTGA TCCAGGGGGA CGAGTATCAT CCCGTCATCA TCCTTGATGA TGATGAGAAA 
AAGGTAGGCC AAATCATTTG CGGCATCAAA GTACACCACA GCGGTGAATT TGAGAAACTG 
AAGCCGCTCT ATCAACCCGT TAAGTTGTTG TTGGCGATTA ATAACATACA AAAAGGTCAA 
CGGCTGAGAT TACTAGAGAA GCTTTCTCAT TGGCCGATTG AAGTGCAATC CGTGCCCTCG 
GTTGAAGACA TCGCCGCCGG TAAGGCTGTC GCCACGGAAG TACGCGATCT GGATGTCGCG 
GACTTGCTGG GCCGCGCGGC GGTTGACCCC GACAAGCAGT TGATGACGAA AAACATTACG 
GGAAAATCCG TGATGGTAAC GGGTGCCGGT GGGTCGATTG GTTCGGAGCT TTGCCGCCAG 
ATTCTGGCGC AGCGCCCATG CACATTAGTG CTATTTGAAC TAAACGAATA CAACCTCTAC 
ACCATCGACC AGGAACTGCA GGGTATTAAA AAGCGCCTGA TGCTTGAGAC GAAAATCGTC 
ACGGCATTAG GTTCGGTACA AAAACAAAAC CGGGTGCAAA AGCTGATTCA TACTCATCAA 
GTCGAAACGA TTTACCATGC CGCAGCTTAC AAACATGTGC CATTAGTTGA AGAGAATGTG 
ATTGAAGGGA TCCGCAATAA CGTATTTGGT ACATTGGCCT GCGCCGAAGC AGCGATAGCC 
GAAGGGGTGG AAAATTTCAC ACTGATCTCC ACAGACAAAG CGGTGCGTCC AACCAATATC 
ATGGGCACCA GCAAACGGAT GGCGGAACTC ATTTTGCAAG CGCTGGCGGA ACGCCAAAAC 
CAAACAACAT TCACCATGGT GAGATTTGGT AATGTATTGG GGTCATCCGG CTCGGTTGTC 
CCGCTGTTTA AAAAGCAGAT CCGCCAAGGC GGCCCGGTAA CAGTGACACA CCCGGATATT 
ATTCGTTATT TTATGCTTAT TCCCGAAGCG GCACAGTTGG TGATACAAGC CGGGGCCATG 
GGGATGAATG GGCAGGTATT CGTATTGGAT ATGGGCGAGC CTGTCAAAAT TCTCGATTTA 
GCCCGCAGAA TGATCAACCT GATGGGAATG AAAAGCTATA TAGAGGGCCA GGGGCACGCG 
GAAGAAGGCG ATATCGGGAT TAAGTTCACG GGATTACGCC CCGGAGAAAA ACTTTATGAA 
GAGTTATTGA TCGGTGAAAA TGTTGAAGGG ACCAGCCATC CGAAAATCAT GACGGCGCAG 
GAAGAGAAGT TGAGTTGGCA AGAGATGGCG CAATTATTAG ATAAACTGGA TAAGAATTGC 
CATGAATTTG ATGTTGAGGC AATTAAAGAG CTCTTATTAG ATGCGCCGAC TGGCTATTCC 
GTAGCTTTGA GTGGACTGAC CCCGCCCCGG TAG 

 

Protein sequence

MFKLIPLLLN AERTTKRIVT VSYDIIAIVF SLYLAVAVRL GTAEFPVGYA EIASVIVTLS 
ITILVFIRCG MYRAVLRYMM LPAMGYVFLS VILSAISLAL SSFFFQSFVP RSVPFIYAGL 
ATLALGSPRV LIRTFYYHYY KRQKPNVFIY GAGATGRDLL YALIQGDEYH PVIILDDDEK 
KVGQIICGIK VHHSGEFEKL KPLYQPVKLL LAINNIQKGQ RLRLLEKLSH WPIEVQSVPS 
VEDIAAGKAV ATEVRDLDVA DLLGRAAVDP DKQLMTKNIT GKSVMVTGAG GSIGSELCRQ 
ILAQRPCTLV LFELNEYNLY TIDQELQGIK KRLMLETKIV TALGSVQKQN RVQKLIHTHQ 
VETIYHAAAY KHVPLVEENV IEGIRNNVFG TLACAEAAIA EGVENFTLIS TDKAVRPTNI 
MGTSKRMAEL ILQALAERQN QTTFTMVRFG NVLGSSGSVV PLFKKQIRQG GPVTVTHPDI 
IRYFMLIPEA AQLVIQAGAM GMNGQVFVLD MGEPVKILDL ARRMINLMGM KSYIEGQGHA 
EEGDIGIKFT GLRPGEKLYE ELLIGENVEG TSHPKIMTAQ EEKLSWQEMA QLLDKLDKNC 
HEFDVEAIKE LLLDAPTGYS VALSGLTPPR