Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd1591_2402 |
Symbol | rimO |
ID | 8120814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya zeae Ech1591 |
Kingdom | Bacteria |
Replicon accession | NC_012912 |
Strand | + |
Start bp | 2747580 |
End bp | 2748983 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644852786 |
Product | ribosomal protein S12 methylthiotransferase |
Protein accession | YP_003004722 |
Protein GI | 251790001 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTGTTA ATACCTTCGA TCCATCCCAG ACCACTACAC TCTCGGCTCC GCAAAAGGCA CTGAGCGATC AGTCCGGCGA TGCCGGCAAG GACCTGTCCC GCAAGATTGG CTTTGTCAGC CTCGGATGCC CGAAAAACCT GGTGGATTCT GAGCGGATCC TGACTGAGCT GCGTACTGAA GGCTATCAGG TAGTACCGAG CTACAACGAT GCCGATCTGG TGATCGTCAA TACCTGTGGT TTCATCGACA GCGCAGTGCA GGAGTCACTG GAAGCGATTG GCGAAGCGCT CAACGAAAAC GGTAAGGTCA TCGTGACCGG CTGTCTGGGC GCGAAAGAGA ATCAGATCCG CGAAGTGCAT CCAAAAGTGT TGGAAATCAC CGGCCCGCAT AGCTATGAGC AGGTACTTAA GCATGTGCAT CATTATGTTC CCAAACCGGA ACATGACCCG TTCACCAGCT TGATCCCGGC GCAGGGTGTA AAGCTGACGC CGCGTCATTA CGCTTACCTG AAAATTTCTG AAGGCTGCGA TCATCGCTGC ACCTTTTGCA TTATTCCATC AATGCGCGGT GATTTAGACA GCCGCCCCAT CGGTTCGGTG CTGGATGAAG CCAAACGGCT GGCAGAAGCC GGGGTAAAAG AATTGCTGGT GATTTCTCAG GATACCTCTG CCTACGGTGC CGACGTCAAA CACCGTACCG GATTCTGGAA CGGCCAACCG GTGAAAACCA GTATGGTCAG CCTGTGTGAA CAACTGGCGA CGTTAGGCAT GTGGGTTCGC CTGCATTATG TCTACCCCTA TCCGCATGTC GATGACGTTA TCCCGCTGAT GGCGGCGGGC AAGGTCCTGC CGTATCTGGA TATCCCGTTG CAACATGCCA GCCCGAAGGT CCTCAAGCTG ATGAAACGGC CCGGCGCGGT CGAGCGGACG CTGGAGCGCA TCAAGCGCTG GCGTGAGATC TGCCCTGACC TCACCTTACG CTCAACGTTT ATTGTCGGTT TCCCTGGCGA AACCGAAGAA GATTTCCAGA TGCTGCTGGA TTTTCTGCAG GAAGCGCAGT TAGACCGCGT AGGTTGCTTC CGCTATAGCC CGGTCGAAGG GGCTGCGGCA AACGACTTGC CGGATCACGT GCCGGAAGAC GTGAAAGAAG ATCGTTACCA TCGCTTTATG CAGGTACAAC AACAGATTTC CAGCCAGCGT TTGCAAGCCA AGGTTGGCCG GGAATTGAAA GTGTTGATCG ATGAGGTGGA TGACGAAGGC GCCATTGGCC GTAGTATGGC CGATGCGCCG GAGATCGACG GTGCGGTCTA TCTGAACGGC GAAAAACGGG TCAAGGTTGG CGACCTGGTT ACCGTAAAAA TCGAACACGC CGACGAATAC GATCTGTGGG GCAGTCTGGT CTGA
|
Protein sequence | MTVNTFDPSQ TTTLSAPQKA LSDQSGDAGK DLSRKIGFVS LGCPKNLVDS ERILTELRTE GYQVVPSYND ADLVIVNTCG FIDSAVQESL EAIGEALNEN GKVIVTGCLG AKENQIREVH PKVLEITGPH SYEQVLKHVH HYVPKPEHDP FTSLIPAQGV KLTPRHYAYL KISEGCDHRC TFCIIPSMRG DLDSRPIGSV LDEAKRLAEA GVKELLVISQ DTSAYGADVK HRTGFWNGQP VKTSMVSLCE QLATLGMWVR LHYVYPYPHV DDVIPLMAAG KVLPYLDIPL QHASPKVLKL MKRPGAVERT LERIKRWREI CPDLTLRSTF IVGFPGETEE DFQMLLDFLQ EAQLDRVGCF RYSPVEGAAA NDLPDHVPED VKEDRYHRFM QVQQQISSQR LQAKVGRELK VLIDEVDDEG AIGRSMADAP EIDGAVYLNG EKRVKVGDLV TVKIEHADEY DLWGSLV
|
| |