Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd1591_1501 |
Symbol | |
ID | 8117376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya zeae Ech1591 |
Kingdom | Bacteria |
Replicon accession | NC_012912 |
Strand | + |
Start bp | 1717937 |
End bp | 1718455 |
Gene Length | 519 bp |
Protein Length | 172 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644851892 |
Product | type VI secretion system effector, Hcp1 family |
Protein accession | YP_003003838 |
Protein GI | 251789117 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAACTC CATGCTATAT CAGCATCGAA GGTAAAACGC AGGGCAACAT CACCGCCGGT GCCTTCACCT CCGACTCCGT CGGCAACATC TACGTGCAGG GTCACGAAGA CGAGATGCTG GTGCAGGAAT TCAAACACAT CGTCACCGTC CCGACCGACC CGCAGTCCGG CCAGCCTGCC GGTCAGCGCG TGCACAAACC GTTCAAGTTC ACCGTTGCGC TGAACAAAGC CGTCCCGCTG CTGTATAACG CGCTGGCCTC CGGCGAAATG CTGCCGACCG TGACCCTGAA ATGGTACCGC ACCTCTGTCG AAGGCAAGCA GGAGCATTTC TTCACCACCA CCCTCACCGA CGCCACCATC GTCGACATCA ACAACCAGAT GCCGCACTGC CAGGACCCGT CCAAGCAGGA CTACACCCAG CTGATTGAAG TGTCGCTGGC CTACCGCAAG GTGGACTGGG AGCACACCGT GGCCGGGACC TCCGGCTCTG ACGACTGGCG TGCGCCGATC GAAGCGTAA
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Protein sequence | MPTPCYISIE GKTQGNITAG AFTSDSVGNI YVQGHEDEML VQEFKHIVTV PTDPQSGQPA GQRVHKPFKF TVALNKAVPL LYNALASGEM LPTVTLKWYR TSVEGKQEHF FTTTLTDATI VDINNQMPHC QDPSKQDYTQ LIEVSLAYRK VDWEHTVAGT SGSDDWRAPI EA
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