Gene Dd1591_1501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd1591_1501 
Symbol 
ID8117376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya zeae Ech1591 
KingdomBacteria 
Replicon accessionNC_012912 
Strand
Start bp1717937 
End bp1718455 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content61% 
IMG OID644851892 
Producttype VI secretion system effector, Hcp1 family 
Protein accessionYP_003003838 
Protein GI251789117 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAACTC CATGCTATAT CAGCATCGAA GGTAAAACGC AGGGCAACAT CACCGCCGGT 
GCCTTCACCT CCGACTCCGT CGGCAACATC TACGTGCAGG GTCACGAAGA CGAGATGCTG
GTGCAGGAAT TCAAACACAT CGTCACCGTC CCGACCGACC CGCAGTCCGG CCAGCCTGCC
GGTCAGCGCG TGCACAAACC GTTCAAGTTC ACCGTTGCGC TGAACAAAGC CGTCCCGCTG
CTGTATAACG CGCTGGCCTC CGGCGAAATG CTGCCGACCG TGACCCTGAA ATGGTACCGC
ACCTCTGTCG AAGGCAAGCA GGAGCATTTC TTCACCACCA CCCTCACCGA CGCCACCATC
GTCGACATCA ACAACCAGAT GCCGCACTGC CAGGACCCGT CCAAGCAGGA CTACACCCAG
CTGATTGAAG TGTCGCTGGC CTACCGCAAG GTGGACTGGG AGCACACCGT GGCCGGGACC
TCCGGCTCTG ACGACTGGCG TGCGCCGATC GAAGCGTAA
 
Protein sequence
MPTPCYISIE GKTQGNITAG AFTSDSVGNI YVQGHEDEML VQEFKHIVTV PTDPQSGQPA 
GQRVHKPFKF TVALNKAVPL LYNALASGEM LPTVTLKWYR TSVEGKQEHF FTTTLTDATI
VDINNQMPHC QDPSKQDYTQ LIEVSLAYRK VDWEHTVAGT SGSDDWRAPI EA