Gene Dd1591_1162 details

Gene Information

• Locus tag: Dd1591_1162
• ID: 8118714
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: -
• Start bp: 1327205
• End bp: 1329058
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644851559
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_003003508
• Protein GI: 251788787
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.754803
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCAACA GTACCGGATT GCAGTTTACC GTGAAGGTCG GCGCGTTGCC GGAAACGACG 
TTCGCGGTGG TGGATTTTGA ACTCAGCGAG GCGCTGAACC AGCCGTTTGC GCTGTCGCTC 
AATCTGGCCA GCAGTCAGGC CGACATCGAC TTCGGGGCGG TGCTGGACCA GCCGTGCGAG 
CTGCTGGTGT GGTACGAAGG CGAACTGCAA CGCCGGGTCA GCGGTATCGT CAGCCGCTTT 
GCCCAGGGCG ACACCGGTTT TCGCCGCACG CGTTATCAGG CCGAGGTGCG CCCGGCACTG 
TGGCGGCTCG GTCTGCGTAC CAACGCCCGC ATCTTCCAGA CCCAGAAGCC GGAGGCGATT 
ATCAGCACCC TGCTGGAAGA AGCCGGAATT ACCGATTACG CCTTCGCTCT GCGCCACGAC 
CACGCGGTGC GTGAATACTG CGTGCAGTAC CGCGAAAGCG ACCTGGCGTT CATCAACCGG 
CTGGCGGCGG AAGAAGGGAT GTTCTACTTC CACGAGTTTG AAGCCGGTAA GCACCGGGTG 
GTGTTTGCCG ACGACGCCGG CGCGCTGGCC AAAGGCCCGG CGCTGTTCTT CAATCTCGCC 
ACCCAAGGGT TGTCCGAAGG CGCTTACGTG CGCCGTTTCC GCTACGCCGA AGCGGTAAGC 
ACCGCCGAGG TGGAACTGAA GGACTACAGC TTCAAAACCC CGGCATATGG GTTGTCCCAC 
AAGAAGACCA GTAACGAGCT GGATCACCAA CGTGAATCCT ACCAGCACTT CGACTACCCC 
GGCCGCTTCA AGCAGGACCC CAGCGGCAAG GCGTTTACCG GCTACCGGCT GGACGCGCTG 
CGCGCCGGCG CGATGACCGG GGCGGGTGAA TCCAACGCCG CCGGACTGAT GCCGGGCAGC 
AGCTTTACCC TGACTGAGCA CCCTAACCCG GCGTTTAATC TCGCCTGGCA GGTGGTGGCG 
GTGACCCACA GCGGCCAGCA GCCGCAGGCG CTGGAGGAAG AGAGCGGCGG CGAGCCGACC 
ACCCTCAGCA ACAGTTTCGA GGTGGTGAAA GCCACCACCA CCTGGCGGGC GGCCATGCCG 
TACAAGCCGA TGGTGGACGG CCCGCAGATT GCCACCGTGG TCGGCCCGGC GGGGGAAGAG 
ATTTACTGCG ACGAGTTTGG CCGGGTGAAG CTGCAGTTCC CGTGGGACCG CTACGGTGCC 
AGCGACGACC AGAGCTCCTG CTGGGTGCGG GTCAGTCAGG GTTGGGCCGG TGGTCAGTAC 
GGCCTGATTG CCATTCCGCG TATCGGTCAT GAAGTGGTGG TGAGCTTTCT GGAGGGCGAC 
CCGGACCAGC CCATCGTCAC CGGGCGCACC TTCCATGCCA CCAACCCGTC GCCGTATCCG 
CTGCCGGCCA GCAAGACCCG CACCTCGCTG CGCACCCGTA CCCATAAAGG GGCCGGGTTC 
AACGAGCTGC GCTTTGAAGA CCAGGCCGGG CAGGAAGAGG TGTTTATCCA CGCCCAGAAG 
GACATGAACA CTGTGGTGCT GAACAACCGC AGCACGTCGG TCAACGCCAG TCATACCGAG 
AATGTCGGCG GCGACCAGAC GGTGGTGGTG CAGCATAACC AGACGGTGTC GGTGAAGGAA 
AATCAGGTCA CCGAAATTCA GGGCGAGCAG ACCGTCGCCG TCACCCAAAA CCGCCACACC 
ACCGTCAACG ACAACGAGTC GCTGCAGGTG AAAAACAATA TCGCCATCCA GTCCCAGAGC 
GGCGACATCC TGATTGCCAC CGCGGGCGGC TTCATCGCCA TCGACAAGGA CGGCAACATT 
TCCATTACCG GCAAAGGACT GGTGCTGAAC GGCACCCGTA TCGATTTGAA CTGA 

 

Protein sequence

MANSTGLQFT VKVGALPETT FAVVDFELSE ALNQPFALSL NLASSQADID FGAVLDQPCE 
LLVWYEGELQ RRVSGIVSRF AQGDTGFRRT RYQAEVRPAL WRLGLRTNAR IFQTQKPEAI 
ISTLLEEAGI TDYAFALRHD HAVREYCVQY RESDLAFINR LAAEEGMFYF HEFEAGKHRV 
VFADDAGALA KGPALFFNLA TQGLSEGAYV RRFRYAEAVS TAEVELKDYS FKTPAYGLSH 
KKTSNELDHQ RESYQHFDYP GRFKQDPSGK AFTGYRLDAL RAGAMTGAGE SNAAGLMPGS 
SFTLTEHPNP AFNLAWQVVA VTHSGQQPQA LEEESGGEPT TLSNSFEVVK ATTTWRAAMP 
YKPMVDGPQI ATVVGPAGEE IYCDEFGRVK LQFPWDRYGA SDDQSSCWVR VSQGWAGGQY 
GLIAIPRIGH EVVVSFLEGD PDQPIVTGRT FHATNPSPYP LPASKTRTSL RTRTHKGAGF 
NELRFEDQAG QEEVFIHAQK DMNTVVLNNR STSVNASHTE NVGGDQTVVV QHNQTVSVKE 
NQVTEIQGEQ TVAVTQNRHT TVNDNESLQV KNNIAIQSQS GDILIATAGG FIAIDKDGNI 
SITGKGLVLN GTRIDLN