| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0814 |
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| Symbol | rumA |
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| ID | 8120630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | + |
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| Start bp | 941192 |
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| End bp | 942526 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644851200 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_003003172 |
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| Protein GI | 251788451 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.034918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAT TCTACTCTCC AAACCGGCGC GTGACGACCC GGCAAACCCT TACCGTGACG
GTGAATGATC TCGATCCATT CGGACAGGGA GTAGCCCGCC ATCAGGGAAA AACGGTGTTC
ATTCCCGGCG TATTACCGGG AGAGCAGGCC GAAGTGCAGC TGACGCAAGA TAAACGCCAG
TTTGCTCACG CCGTACTGCG ACGCTTGTTG ACCACCAGCG ACGAGCGCGT GACGCCGCGT
TGCCCGCATT TTTCCGTGTG CGGCGGTTGC CAGCAGCAGC ATGTCGATCA GTCATTACAG
CATCGCAGCA AAGCCGCTGC GTTAAAACAC CTGATGAAGC GCGAAACCGG CGAAAACGTG
CCGGAACCGG AAGTGATCGC CGGGGCTGCC TACGGCTACC GCCGTCGCGC ACGGCTTGCA
TTATACTATC AGGCGAAAAC GCGCCGGTTG CAGATGGGCT ACCGGCAGGC GGGATCGCAC
GATTTGGTGG ATATCAACGC CTGCCCGATT CTGCGACCGG AGTTGGAGGC GCTGCTGGCG
CCGTTGCGCG ATTGTCTTCG GCAGTTGCAG GCGGTACGAC GGCTGGGGCA CGTAGAATTG
GTACTGGCTG AGCAGGGGCC ACTGGTCATT TTGCGTCATC TGGATCCGTT GTGTGAGGCG
GATCGGCAAG CGCTGACGGC GTTTGCGGCG GCACAAGGGG TGGCGTTGTT TGCTGCGCCG
GAAGCGGACG CGCTGTCCTG TCTGTACGGC GATGCGCCGT CTTATCGTAT CGCCGGGTTG
TCGCTGGCGT TCAGCCCGCG GGATTTCATT CAGGTCAATG ATGAGATCAA TCAGCGGATG
GTGGAGCAGG CGTTGGCCTG GCTGGACCCG CAGCCGCAGG ACCGAGTGCT CGATCTGTTT
TGTGGGATGG GGAATTTCAC GTTGCCGCTG GCGGAGCGTG CCGGCCGCGT GGTCGGGGTT
GAAGGTGTGG CGGCGCTGGT GGACAAAGGG CGGGAAAACG CAACGCGTAA CGGCCTGACG
CAGGTCACAT TTTATCATCA TAATCTGGAA GAGGACGTCA CCCGGCAACC ATGGGCGTCG
ATGGGATTTG ATAAAGTATT GCTGGACCCG GCCCGTGCCG GCGCGCCGGG CGTGATGCCG
CAGATTGTGA AACTGGCTCC CCGGCGGGTG GTGTATATAT CCTGTAATCC CACTACGCTG
GCGCGGGACA GCAAGCTATT GATGGCTGCC GGTTATCGTC TGGCCCGGCT GACCATGTTG
GATATGTTTC CACATACCGG ACATCTTGAG TCAATGGCAC TGTTTTTGCT TGGTTCCGAT
GGCTCGGTAA AGTAG
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| Protein sequence | MAQFYSPNRR VTTRQTLTVT VNDLDPFGQG VARHQGKTVF IPGVLPGEQA EVQLTQDKRQ
FAHAVLRRLL TTSDERVTPR CPHFSVCGGC QQQHVDQSLQ HRSKAAALKH LMKRETGENV
PEPEVIAGAA YGYRRRARLA LYYQAKTRRL QMGYRQAGSH DLVDINACPI LRPELEALLA
PLRDCLRQLQ AVRRLGHVEL VLAEQGPLVI LRHLDPLCEA DRQALTAFAA AQGVALFAAP
EADALSCLYG DAPSYRIAGL SLAFSPRDFI QVNDEINQRM VEQALAWLDP QPQDRVLDLF
CGMGNFTLPL AERAGRVVGV EGVAALVDKG RENATRNGLT QVTFYHHNLE EDVTRQPWAS
MGFDKVLLDP ARAGAPGVMP QIVKLAPRRV VYISCNPTTL ARDSKLLMAA GYRLARLTML
DMFPHTGHLE SMALFLLGSD GSVK
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