| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0801 |
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| Symbol | ligA |
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| ID | 8120617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | + |
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| Start bp | 922884 |
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| End bp | 924932 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644851187 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_003003159 |
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| Protein GI | 251788438 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGTAA AAAGAGCTAA TCAGCAGAAT GTTGATACTG CCAGAAGGCG AATCAAAGAG
TTACGAATAT TGATTCGCCA CCACGACATT AAGTATCACT CTGAAGATGA TCCTGAGATT
CTGGATTCAG AATATGACCT TTTGAAGAGA GAACTGAGTG AACTAGAAAT TCAGCATCCT
TTTTTGGTGA CCTCAGACTC ACCTACACAG AGAGTTGGTG CAGAGCCTTT AGTTGCTTTT
GGAACGATCA AACATGAAGT TCCAATGTTA TCACTGGATA ATGTATTCAA TGAGGATGGG
TTTAAGGCTT TTTCTAAACG TGTTAGTGAA CGGTTGAAAA ATGATAAAGA ACTGATCTTC
TGTTGCGAAC TTAAGCTTGA TGGACTCGCT GTCAGTTTAT TGTATGAAAA TGGAATTCTT
GAGCGTGCAT CTACCCGTGG TGATGGAACG ACAGGTGAAA ATATTACATC TAACGTTCGA
ACTATAAGAG CTATCCCCTT GCGCTTGGAA GGAGACAACA TCCCGCAGCG GCTGGAAGTA
CGCGGCGAAG TATTCATGAA GCACAAGGGT TTTGAGGCCC TGAATGAGGA AGCGCGCCGC
ACCGGCGGTA AAGTGTTCGC CAATCCACGC AATGCGGCGG CGGGTTCATT GCGCCAGTTG
GATCCGCGCG TTACCGCCAC TCGCCCGTTG ACCTTCCTGT GTTACGGCGT TGGGTTGGTG
GAAGGCGGAG CCCTGCCGGA TACCCACTGG CAGCGTTTAA TGCAATTCCG CGATTGGGGG
CTGCCGGTCA GCGATCGCAT TCGTTTGTGT ACCGGCAGTG ACGCGGTGTT GGATTTCTAC
CGTCAGGTCG AGCAGGAACG CGGGGCGCTG GGGTTCGACA TCGATGGCGT GGTGATCAAG
GTCAACGAAC TGACGTTACA GGAACGGCTG GGCTTTGTGG CGCGTGCGCC GCGCTGGGCG
GTGGCATTCA AGTTTCCGGC ACAAGAGCAA CTGACCTGGT TGCGAGACGT TGAGTTTCAG
GTCGGCCGTA CCGGTGCGAT TACGCCGGTG GCGCGACTGG AGCCGGTAGC CGTCGCCGGC
GTGGTGGTCA GCAATGCCAC GCTGCACAAT GCTGATGAAA TTGAACGTCT GGGGGTGCAG
ATCGGCGACC GGGTCGCGGT ACGTCGTGCG GGTGACGTCA TCCCGCAGAT CGTGAGCGTG
GTGCTGTCTG AACGTCCGGC GGATGCCCGA CCAGTAGTAT TTCCTACTCA TTGCCCGGTG
TGTGGTTCTG ATGTGGAGCG TGTGGAAGGC GAAGCGGTCG CCCGCTGTAC CGGTGGCCTG
TTCTGCGCCG CACAACGTAA AGAAGCGCTG AAGCACTTTG TTTCACGTCG CGCGTTGGAT
GTGGAAGGCA TGGGCGATAA AATTATCGAC CAGTTGGTAG ACAAAGAGTA CGTCAAGACG
CCGGCGGATC TGCTTCGTCT GGATATCGGC ATTCTTACCC GGTTGGATCG CATGGGGCCG
AAGTCGGCAC AGAACCTGGT CAATGCGCTG AACAAAGCCA AATCCACCAC GTTTGCCCGT
TTCCTGTACG CGTTAGGTAT TCGTGACGTG GGAGAGGCGA CGGCAGCAAA TCTGGCGGCA
CATTTCGGTA CGCTGGAAGC GTTGCAGGCG GCCGATCTGG ACGCTTTGCA GCAGGTGCAG
GATGTCGGCA TCGTGGTAGC GACGCATGTG CGCAACTTTC TTGATGAGGC GCACAATCAG
CAGGTGATTC AGGAGTTGAT CGGCGATGAT GTCGGTCTTC ACTGGCCGGA TCCGGTGGTG
GTGGATGTTG AAGCGTCAAC GAGCCCGTTT GCCGGCAAAA CCGTGGTATT GACTGGCTCG
CTGAGCCTGT TGTCCCGTGA TGAAGCCAAA GATCGTCTTA CCGCGCTGGG AGCGAAGGTC
AGCGGCAGCG TGTCGAAGAA AACCGATCTG GTCATCGCCG GCGAAGCTGC CGGTTCCAAG
CTGACCAAAG CGCAGGAACT GGGTATTGAC GTTATTGATG AAGCGGAGAT GATGCGTCTG
CTGGGGTGA
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| Protein sequence | MSVKRANQQN VDTARRRIKE LRILIRHHDI KYHSEDDPEI LDSEYDLLKR ELSELEIQHP
FLVTSDSPTQ RVGAEPLVAF GTIKHEVPML SLDNVFNEDG FKAFSKRVSE RLKNDKELIF
CCELKLDGLA VSLLYENGIL ERASTRGDGT TGENITSNVR TIRAIPLRLE GDNIPQRLEV
RGEVFMKHKG FEALNEEARR TGGKVFANPR NAAAGSLRQL DPRVTATRPL TFLCYGVGLV
EGGALPDTHW QRLMQFRDWG LPVSDRIRLC TGSDAVLDFY RQVEQERGAL GFDIDGVVIK
VNELTLQERL GFVARAPRWA VAFKFPAQEQ LTWLRDVEFQ VGRTGAITPV ARLEPVAVAG
VVVSNATLHN ADEIERLGVQ IGDRVAVRRA GDVIPQIVSV VLSERPADAR PVVFPTHCPV
CGSDVERVEG EAVARCTGGL FCAAQRKEAL KHFVSRRALD VEGMGDKIID QLVDKEYVKT
PADLLRLDIG ILTRLDRMGP KSAQNLVNAL NKAKSTTFAR FLYALGIRDV GEATAANLAA
HFGTLEALQA ADLDALQQVQ DVGIVVATHV RNFLDEAHNQ QVIQELIGDD VGLHWPDPVV
VDVEASTSPF AGKTVVLTGS LSLLSRDEAK DRLTALGAKV SGSVSKKTDL VIAGEAAGSK
LTKAQELGID VIDEAEMMRL LG
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