| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0551 |
|---|
| Symbol | |
|---|
| ID | 8119834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 627637 |
|---|
| End bp | 628587 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644850940 |
|---|
| Product | hydroxymethylbutenyl pyrophosphate reductase |
|---|
| Protein accession | YP_003002912 |
|---|
| Protein GI | 251788191 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCC TGCTGGCTAA TCCTCGTGGG TTCTGCGCTG GCGTCGATCG TGCCATCAGT
ATTGTCGAGC GGGCGTTGGA AGTGTATGGC GCACCGATTT ATGTCCGCCA TGAAGTGGTG
CATAACCGCT ATGTGGTGGA AGGGTTGCGC GAACGCGGCG CCGTCTTCAT CGAACAAATC
GAAGACGTGC CGGATGGCGC GATTCTGATT TTTTCCGCGC ATGGCGTATC GCAAGCCGTG
AGGGCGGAAG CCAAAAGCCG CGAACTGACG ATTTTCGATG CCACCTGTCC GTTGGTGACG
AAAGTGCATA TGGAAGTGGC GCGCGCCAGC CGTAAGGGAA CGGAAGCTAT CCTGATTGGG
CACGCCGGGC ATCCTGAAGT CGAAGGGACC ATGGGGCAGT ACAACAATCC TGACGGCGGT
ATGTATCTGG TGGAAGGGCC CGAAGATGTC TGGTCGTTAC AGGTAAAAGA TGAAACCAAT
CTCTGTTTCA TGACCCAGAC GACGCTGTCG GTAGACGATA CGTCGGCGGT GATCGATGCA
CTGCGTGCGC GTTTCCCGCA GATTATCGGG CCGCGTAAAG ATGATATCTG TTACGCCACG
ACCAATCGTC AGGAAGCGGT ACGCAATCTG GCGGCGGAGG CCAACGTGGT GCTGGTGGTC
GGCTCGAAAA ACTCTTCCAA CTCCAATCGC CTGGCCGAGC TGGCGCAGCG TGTCGGTAAG
CCGTCATACC TGATTGATTC TGCTGATGAT ATTCAGGAAC AGTGGCTGAA GGATGTCGCC
TGCGTCGGGG TGACGGCAGG TGCCTCCGCG CCGGATGTGC TGGTTCAACA GGTGATTAAA
CGCTTGCAAG CCATGGGGGG GAAAGTTGCC ATGGAGATGC AAGGGCGTGA AGAGAACATC
GTGTTCGAAG TGCCGAAAGA ATTACGTATG GATGTGCGTG AAGTGGAATA A
|
|---|
| Protein sequence | MKILLANPRG FCAGVDRAIS IVERALEVYG APIYVRHEVV HNRYVVEGLR ERGAVFIEQI
EDVPDGAILI FSAHGVSQAV RAEAKSRELT IFDATCPLVT KVHMEVARAS RKGTEAILIG
HAGHPEVEGT MGQYNNPDGG MYLVEGPEDV WSLQVKDETN LCFMTQTTLS VDDTSAVIDA
LRARFPQIIG PRKDDICYAT TNRQEAVRNL AAEANVVLVV GSKNSSNSNR LAELAQRVGK
PSYLIDSADD IQEQWLKDVA CVGVTAGASA PDVLVQQVIK RLQAMGGKVA MEMQGREENI
VFEVPKELRM DVREVE
|
|---|
| |