Gene Dd1591_0418 details

Gene Information

• Locus tag: Dd1591_0418
• ID: 8118507
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 481104
• End bp: 482957
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 644850812
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_003002785
• Protein GI: 251788064
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCAACA GTACAGGATT GCAGTTTACC GTGAAGGTCG GCGCGTTGCC GGACACCACC 
TTCGCGGTGG TGGATTTTGA ACTCAGCGAG GCGCTGAACC AGCCGTTCGC GCTGTCGCTC 
AATCTGGCCA GCAGCCAGCC CGGCATCGAT TTTGGCGCGG TGCTGGACCA GCCATGCGAG 
CTGCTGGTGT GGTACGAAGG CGAACTGCAG CGCCGGGTCA GCGGTATCGT CAGCCGCTTT 
GCCCAGGGCG ATACCGGTTT TCGCCGCACC CGCTATCAGG CAGAAGTGCG CCCGGCGCTG 
TGGCGGCTCG GTCTGCGCAC CAACGCCCGC ATCTTCCAGA CCCAGAAGCC GGACACCATT 
ATCAGTACCC TGCTGGAAGA AGCCGGAATT ACCGATTACG CCTTCGCCCT GCGCCATGAC 
CACGTGGTGC GAGAGTACTG CGTGCAGTAC CGCGAAAGCG ACCTGGCGTT CATCCACCGG 
CTGGCGGCGG AAGAAGGGCT GTTCTACTTC CACGAATTTG AGGCCGGTAA GCACCGGGTG 
GTGTTCGCCG ATGACGCCGG TGCGCTGACC AAAGGCCCGG AGCTGTTCTT CAATCTCGCC 
ACGCAGGGGC TGAGCGAAGG GGCGTATGTG CGGCGTTTCC GCTACGCCGA AGCGGTCAGT 
ACCGCCGAAG TGGCGCTGAA GGACTACAGC TTCAAAACGC CAGCCTACGG GTTGCTGCAT 
AACAAGATGA GCAGCGAGCT GGACCATCAG CGCGAATCCT ACCAGCACTT TGATTACCCC 
GGCCGTTTCA AGCAGGACCC GAGCGGCAAG GCGTTTACCG GCTACCGGCT GGACGCGCTG 
CGCGCCGGCG CGATGACCGG GGCGGGTGAA TCCAACGCCG CCGAACTGAG GCCGGGCAGC 
AGCTTTACCC TGACTGAGCA CCCTAACCCG GCGTTTAATC TGGCCTGGCA GGTGGTGGCG 
GTGACCCACA GCGGCCAGCA GCCGCAGGCG CTGGAGGAAG AGAGCGGCGG CGAGCCGACC 
ACCCTCAGCA ACAGTTTCGA GGTGGTGAAA GCCACCACCA CCTGGCGGGC GGCCATGCCG 
TACAAGCCGA TGGTGGACGG CCCGCAGATT GCCACCGTGG TCGGCCCGGC GGGCGAAGAG 
ATTTACTGCG ACGAGTTTGG CCGGGTGAAG CTGCAGTTCC CGTGGGACCG CTACGGTGCC 
AGCGACGACC AGAGCTCCTG CTGGGTGCGG GTCAGTCAGG GCTGGGCCGG TGGCCAGTAC 
GGCCTGATTG CCATTCCGCG TATCGGTCAT GAGGTGGTGG TGAGCTTTCT GGAAGGCGAC 
CCGGACCAGC CCATCGTCAC CGGGCGCACC TTTCACGCCA CCAACCCCTC GCCGTATCCG 
TTGCCGGCCA ACAAAACCCG CACCTCGCTG CGCACCAGTA CCCATAAAGG GGCCGGGTTC 
AACGAACTGC GCTTTGAAGA CCAGGCCGGG CAGGAAGAGG TGTTTATCCA CGCCCAGAAG 
GACATGAACA CCGTGGTACT GAATAACCGC AGCACGGCGG TCAACGCCAG TCATACCGAG 
AATGTCGGCG GCGACCAGAC GGTGGTGGTG CAGCACAACC AGACGGTGTC GGTGAAGGAA 
AATCAGGTCA CCGAGATTCA GGGCGAGCAG ACCGTCGCCG TCACCAAAAA CCGCAACACC 
ACCGTTGACG ACAACGAGTC GCTGCAGGTG AAAAACAATA TCGCCATCCA GTCCCAGAGC 
GGCGACATCC TGATTGCCAC CGCGGGTGGC TTCATCGCCA TTGACAGCGA AGGCAACATT 
TCCATTACCG GCAAAGGACT GGTGCTGAAC GGCACCCGTA TCGATTTGAA CTGA 

 

Protein sequence

MANSTGLQFT VKVGALPDTT FAVVDFELSE ALNQPFALSL NLASSQPGID FGAVLDQPCE 
LLVWYEGELQ RRVSGIVSRF AQGDTGFRRT RYQAEVRPAL WRLGLRTNAR IFQTQKPDTI 
ISTLLEEAGI TDYAFALRHD HVVREYCVQY RESDLAFIHR LAAEEGLFYF HEFEAGKHRV 
VFADDAGALT KGPELFFNLA TQGLSEGAYV RRFRYAEAVS TAEVALKDYS FKTPAYGLLH 
NKMSSELDHQ RESYQHFDYP GRFKQDPSGK AFTGYRLDAL RAGAMTGAGE SNAAELRPGS 
SFTLTEHPNP AFNLAWQVVA VTHSGQQPQA LEEESGGEPT TLSNSFEVVK ATTTWRAAMP 
YKPMVDGPQI ATVVGPAGEE IYCDEFGRVK LQFPWDRYGA SDDQSSCWVR VSQGWAGGQY 
GLIAIPRIGH EVVVSFLEGD PDQPIVTGRT FHATNPSPYP LPANKTRTSL RTSTHKGAGF 
NELRFEDQAG QEEVFIHAQK DMNTVVLNNR STAVNASHTE NVGGDQTVVV QHNQTVSVKE 
NQVTEIQGEQ TVAVTKNRNT TVDDNESLQV KNNIAIQSQS GDILIATAGG FIAIDSEGNI 
SITGKGLVLN GTRIDLN