| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0149 |
|---|
| Symbol | |
|---|
| ID | 8117107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 178228 |
|---|
| End bp | 182205 |
|---|
| Gene Length | 3978 bp |
|---|
| Protein Length | 1325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644850537 |
|---|
| Product | delta-1-pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_003002521 |
|---|
| Protein GI | 251787800 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACCA CCACCATGGG CGTCAAGCTT GATGAGGCCA CGCGCGAGCG TCTCAAAGCC
GCGGCGCGGC GTATCGATCG TACGCCGCAC TGGCTCATTA AACAGGCCAT TTTCAGCTAT
CTCGAACGCC TTGAAAGTGG TGCGGACACG CCTGAAATTC CTCAACCAGC CGGGCAGGAC
CTGATTGAGG CGGCAGAGAT TATGCCGCAA TCGCCGCAAG AAGAAACCCA CCAACCGTTT
CTGGACTTCG CTGAACAGGT ATTGCCGCAG TCGGTGCTGC GTTCTGCTAT CACCGCCGCA
TACCGACGGC CGGAAACGGA AATAGTGCCG ATGTTGCTGG AACAGGCGCG TATGCCGGAG
GCGATGTCGC ATGTCGCCGG CACGCTGGCG GCTCGTCTGG CGGCGACGCT GCGCAATCAG
AAAAACAGCG GCGGTCGCGC GGGCATGGTG CAGGGCCTGT TACAAGAATT CTCGCTGTCA
TCACAGGAAG GGGTGGCATT GATGTGTCTG GCGGAGGCGC TGCTGCGTAT CCCGGATAAG
CCGACGCGAG ACGCATTGAT TCGCGACAAA ATCAGCACCG GCAACTGGCA GTCGCACGTC
GGGCGCAGTG CCTCGTTGTT CGTCAACGCC GCCGCCTGGG GATTGTTGGT TACCGGTAAG
CTGGTTTCCA CTCACAACGA ATCCCACCTG TCCGGCGCGC TCAACCGTAT TATCAGCAAA
AGCGGCGAGC CGCTGGTGCG TAAAGGCGTG GACATGGCGA TGCGGCTGAT GGGCGAACAG
TTCGTCACCG GGGAAACCAT CGCCGAGGCG CTGGCGAATG CCCGTAAGAT GGAAGCGCGA
GGTTTTCGCT ATTCCTATGA CATGCTGGGG GAAGCGGCAC TGACCGCCGA TGACGCCGAG
GCCTATTTAG CTTCCTACCA GCAGGCGATT CACGCTATCG GTAAAGCGGC CGGCGGGCGC
GGTATTTACG AAGGGCCGGG TATTTCCATC AAACTGTCGG CGTTGCATCC GCGTTACAGC
CGGGCGCAAT ACGAACGGGT GATGGATGAG CTTTATCCGC GCCTGTTATC GCTAACGCGG
TTGGCGCGAC AATACGATAT CGGCATTAAC ATTGATGCCG AAGAGGCGGA CCGGCTGGAG
CTGTCGCTCG ATTTGCTGGA GCGGTTGTGT TTCGACCCGC AGTTGGCGGG GTGGAACGGC
ATCGGTTTTG TGATTCAGGC TTACCAGAAG CGTTGCCCGT TCGTGATAGA CGCATTGATT
GACCTGGCGC GCCGCAGCCA GCGGCGGCTG ATGATTCGGC TGGTGAAAGG CGCTTACTGG
GACAGCGAAA TCAAGCGCGC CCAGATGGAT GGGCTGGAAG GTTACCCCGT CTATACCCGC
AAGCTGTATA CCGATATTTC CTACCTGGCC TGCGCCCGCC GCCTGCTGGC GGTGCCGAAT
CTGATCTACC CACAGTTCGC TACCCACAAC GCCCATACGC TCAGCGCCAT TTATCATCTG
GCGGGCAACA ACTACTACCC GGGGCAGTAC GAATTCCAAT GCCTGCACGG CATGGGAGAA
CCGTTGTATG AACAGGTGGT GGGTAAGATG GCGGACGGCA AACTGAATCG CCCGTGCCGA
ATTTACGCAC CGGTCGGCAC CCATGAAACG CTGCTGGCTT ATCTGGTGCG CCGTTTGCTG
GAAAATGGCG CCAACACCTC GTTCGTCAAC CGGATTGCCG ACCCGTCGGT AGCGCTGGAG
ACGCTGGTGG CCGATCCGGT CAGCGAAGCG GAAGTGCTGG CAGCGCGGGA TGGGCAGGTC
GGACAGCCGC ATCCGCGTAT TCCGTTGCCG CGGGCGCTAT ATGGCGGCAC GCGGCGCAAT
GCCGGCGGGC TGGATTTATC CAACGAACAC CGGCTGGCGT CGTTGTCCAG TGCGTTGCTG
AGCGGCGCCG CCCGGTTGTG GCAGGCGCAA CCGATACTGG CTGTTGAGGG CGCTGGCGGT
GGCGAAGGCC GGCCGGTGAT TAACCCGGCG GAGCCGCGCG ATGTGGTGGG GTATGTGCGT
GAGGCGCAGC CGCAGGACAT TGCGCCGGCA TTGGAACAGG CTGCCAGTGC CGGCGATATC
TGGTTTGCCA CACCGGCTGA CGAACGGGCG GCGATTTTGT CGCGTGCCGC CGACTTGCTG
GAAAGTCAGC AACAGCATTT GTTGGGGTTG CTGGTACGCG AGGCGGGCAA AACGCTGGCG
AACGCGGTGG CGGAAGTGCG TGAAGCGGTG GATTTCCTGC GTTATTACGC CGCTCAGGTC
GGCGAGACGT TCAACAATCA TGACTATCGC CCGCTGGGGC CGGTGGTGTG CATCAGTCCG
TGGAACTTTC CACTGGCGAT TTTCACCGGC CAGATAGCGG CGGCGCTGGC GGCGGGTAAC
AGCGTGCTGG CCAAACCGGC GGAACAGACC CCGCTGATTG CCGCGCAGGC GGTACAGATA
TTGCACGAGG CCGGGGTGCC GGCCGGAGCG CTGCAATTGC TGCCGGGCGC CGGCGAAACC
GTCGGCGCAG CGCTGGTGCG CGACGAGCGG GTACGCGGGG TGATGTTTAC CGGCTCCACC
GCTGTTGCCG CGCAGTTGCA GCGAGTGCTG GCCGGGCGGC TCGACCCGCA GGGGCGTACT
ACGCCGCTCA TCGCCGAAAC CGGCGGCGTC AACGCGATGA TTGTCGATTC CTCCGCGCTG
ACCGAGCAGG TGGTGGCGGA TGTCGTGACC TCGGCGTTCG ACAGCGCCGG TCAGCGTTGT
TCGGCGTTGC GGCTGTTGTG CGTGCAAGAA GAGGTGGCGG AAAAAACGCT GGCGATGCTG
CGTGGGGCGA TGGCGGAGTG CCGCATAGGG AACCCGGAGC GGCTTTCCAC CGACGTCGGG
CCGTTGATCG ACGCCGAGGC GAAACAGCAG ATTGCGCGCC ATATTCAAAC CCTGAGAACG
AAAGGGCGAC TGGTGTTTCA GGCAGCCTGG ACGAATAGCC GGGACGAAGC GGAATGGACC
CGCGGGCATT TCATTCCCCC GACGTTGATT GAACTGGAGA GCGTGGAGGA GTTGCAACAG
GAGGTGTTCG GCCCGGTGCT GCATGTGGTG CGCTACTCCC GTAGTCAACT GGATGCGTTG
ATCGGGCAAA TCAACGCCGC CGGTTATGGG CTCACGCTTG GCCTGCATAC CCGTATTGAC
GAGACGATTA CCCGGGTGAC CAGTCAGGCG AAGGTGGGCA ACCTGTATGT AAACCGCAAT
ATGGTCGGGG CGGTGGTCGG CGTGCAGCCG TTCGGCGGCG AAGGGTTGTC CGGCACCGGA
CCCAAAGCGG GCGGGCCGCT TTATCTTCAC CGTTTGCTGT CGCACCGCCC GGATGATGCG
GCGATACAGA CGCTGGCCCG TCAGGACAGC GAGCGCCCGG CAGATTTCAC CGCACGCCAG
ACGCTGTTGG CGGGATTACA GGCACTGGAA ACCTGGGCGC GACAGGTTCA GCGTGACGCA
CTGGTTTCAT GCTGCCAGCG TTACGGCGAA CTGACGCAGA GCGGCACCGT TCGGGTGTTG
CCCGGCCCTA CCGGCGAGCG TGATACCTAT ACGCTGCTGC CGCGCGAGCA GGTGTTGTGC
GTAGCAGATA ACGACGATGA TGCGCTGGTT CAACTGGCGG CGGTGCTGGC GGTGGGCAGC
CGGGCGTTGT GGCTTGATAC GCCGGAGCGG CAGGCGCTGT ATCGGCAACT GCCTGAACGG
GTACGGACAC GGGTGGCGTT TTGCCGCGAT GGCGTGACGG ACGGCAGCCG GTTTGACGCC
GTGATTTTTC ACGGCGACGC CGATCAGTTG CGTCACTTGT GCGAACAGCT GGCGCAGCGC
GACGGCGCGA TTATCGGCGT GCAAGGGTTA TCCCGCGGAG AAACCGACAT TGTGCTGGAA
CGGTTGCTGC TTGAGCGCTC GCTCAGTATC AACATCGCCG CCGCCGGCGG CAACGCCAGC
CTGATGACTA TAGGTTAA
|
|---|
| Protein sequence | MGTTTMGVKL DEATRERLKA AARRIDRTPH WLIKQAIFSY LERLESGADT PEIPQPAGQD
LIEAAEIMPQ SPQEETHQPF LDFAEQVLPQ SVLRSAITAA YRRPETEIVP MLLEQARMPE
AMSHVAGTLA ARLAATLRNQ KNSGGRAGMV QGLLQEFSLS SQEGVALMCL AEALLRIPDK
PTRDALIRDK ISTGNWQSHV GRSASLFVNA AAWGLLVTGK LVSTHNESHL SGALNRIISK
SGEPLVRKGV DMAMRLMGEQ FVTGETIAEA LANARKMEAR GFRYSYDMLG EAALTADDAE
AYLASYQQAI HAIGKAAGGR GIYEGPGISI KLSALHPRYS RAQYERVMDE LYPRLLSLTR
LARQYDIGIN IDAEEADRLE LSLDLLERLC FDPQLAGWNG IGFVIQAYQK RCPFVIDALI
DLARRSQRRL MIRLVKGAYW DSEIKRAQMD GLEGYPVYTR KLYTDISYLA CARRLLAVPN
LIYPQFATHN AHTLSAIYHL AGNNYYPGQY EFQCLHGMGE PLYEQVVGKM ADGKLNRPCR
IYAPVGTHET LLAYLVRRLL ENGANTSFVN RIADPSVALE TLVADPVSEA EVLAARDGQV
GQPHPRIPLP RALYGGTRRN AGGLDLSNEH RLASLSSALL SGAARLWQAQ PILAVEGAGG
GEGRPVINPA EPRDVVGYVR EAQPQDIAPA LEQAASAGDI WFATPADERA AILSRAADLL
ESQQQHLLGL LVREAGKTLA NAVAEVREAV DFLRYYAAQV GETFNNHDYR PLGPVVCISP
WNFPLAIFTG QIAAALAAGN SVLAKPAEQT PLIAAQAVQI LHEAGVPAGA LQLLPGAGET
VGAALVRDER VRGVMFTGST AVAAQLQRVL AGRLDPQGRT TPLIAETGGV NAMIVDSSAL
TEQVVADVVT SAFDSAGQRC SALRLLCVQE EVAEKTLAML RGAMAECRIG NPERLSTDVG
PLIDAEAKQQ IARHIQTLRT KGRLVFQAAW TNSRDEAEWT RGHFIPPTLI ELESVEELQQ
EVFGPVLHVV RYSRSQLDAL IGQINAAGYG LTLGLHTRID ETITRVTSQA KVGNLYVNRN
MVGAVVGVQP FGGEGLSGTG PKAGGPLYLH RLLSHRPDDA AIQTLARQDS ERPADFTARQ
TLLAGLQALE TWARQVQRDA LVSCCQRYGE LTQSGTVRVL PGPTGERDTY TLLPREQVLC
VADNDDDALV QLAAVLAVGS RALWLDTPER QALYRQLPER VRTRVAFCRD GVTDGSRFDA
VIFHGDADQL RHLCEQLAQR DGAIIGVQGL SRGETDIVLE RLLLERSLSI NIAAAGGNAS
LMTIG
|
|---|
| |