| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0061 |
|---|
| Symbol | xylF |
|---|
| ID | 8119006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 73978 |
|---|
| End bp | 74973 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644850442 |
|---|
| Product | D-xylose transporter subunit XylF |
|---|
| Protein accession | YP_003002433 |
|---|
| Protein GI | 251787712 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA AACACGTATT ACTGTCAGCC TGTGCCGCAC TTGTCATGCT GTGTCAGCCG
GGGTTCGCCA AAGAGGTTAA AATCGGTATG GCTATCGACG ACCTGCGTCT TGAGCGCTGG
CAAAAAGATC GGGATATTTT TGTGAAGAGC GCCGAAGAAA AAGGGGCGAA AGTGTTTGTT
CAGTCCGCCA ACGGCAATGA AGGAACGCAA ATATCCCAGA TAGAAAATAT GATTAACCGT
GGCGTCGATG TGCTGGTGAT TATCCCTTAT AACGGTCAGG TTTTAAGTAA CGTGATTGCC
GAAGCCAAAC GCGAGGGAAT AAAAGTACTG GCTTATGACC GTATGATTAA TAATGCAGAT
ATCGATTTTT ACATTTCGTT TGATAATGAA AAAGTCGGAG AGCTTCAGGC ACAATATTTG
ATTAATAAAG TGCCGCAGGG CAGTTATTTC CTGATGGGCG GCTCGCCGGT TGATAATAAT
GCCAAACTGT TCCGTCAGGG ACAGATGAAA GTATTAAAAC CATTCATTGA TAGCGGCAAG
ATTAAGGTCG CGGGCGACCA GTGGGTGGAT GCCTGGCTGC CGGAAAATGC GCTGAAAATC
ATGGAAAACG CGCTGACCGC CAACAACAAC AACATTGATG CGGTGGTGGC GTCGAACGAT
GCGACCGCGG GCGGTGCGAT TCAGGCGCTC TCCGCTCAGG GCCTGGCCGG CAAGGTGGCG
ATATCCGGTC AGGATGCCGA TCTGGCGGCC ATCAAGCGGA TCGTGTCCGG CACTCAGACC
ATGACCGTGT ACAAACCGAT TAGCAAACTG GCGCAGGACG CGGCGAATAT CGCGGTGTTG
CTGGGACAGG GGAAAAAACC GGAGTCTAAC GCCACGCTCA ATAACGGCAA GAAAGAGGTG
CCTGCCTTCT TGCTGACGCC TATCCCGGTC GATAAGGCGA ATATCGATAG CACCGTCGTC
GCCGACGGAT TCCATAAGAA AGCGGATATC TATTAA
|
|---|
| Protein sequence | MKIKHVLLSA CAALVMLCQP GFAKEVKIGM AIDDLRLERW QKDRDIFVKS AEEKGAKVFV
QSANGNEGTQ ISQIENMINR GVDVLVIIPY NGQVLSNVIA EAKREGIKVL AYDRMINNAD
IDFYISFDNE KVGELQAQYL INKVPQGSYF LMGGSPVDNN AKLFRQGQMK VLKPFIDSGK
IKVAGDQWVD AWLPENALKI MENALTANNN NIDAVVASND ATAGGAIQAL SAQGLAGKVA
ISGQDADLAA IKRIVSGTQT MTVYKPISKL AQDAANIAVL LGQGKKPESN ATLNNGKKEV
PAFLLTPIPV DKANIDSTVV ADGFHKKADI Y
|
|---|
| |