| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0052 |
|---|
| Symbol | |
|---|
| ID | 8118997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 60459 |
|---|
| End bp | 62366 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644850433 |
|---|
| Product | PTS system, mannitol-specific IIC subunit |
|---|
| Protein accession | YP_003002424 |
|---|
| Protein GI | 251787703 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2213] Phosphotransferase system, mannitol-specific IIBC component |
|---|
| TIGRFAM ID | [TIGR00851] PTS system, mannitol-specific IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.408793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTCAC CAGATACCAA GGTCAAGGTG CAGAATTTTG GCCGCTTCCT GAGCAATATG
GTGATGCCGA ATATCGGCGC CTTTATTGCC TGGGGGATTA TCACAGCACT GTTTATTCCT
ACCGGATGGA TCCCTAACGC GACGCTGGCC AAGCTGGTCG GCCCGATGAT CACCTATCTG
TTGCCGCTGC TGATTGGTTT TACCGGTGGC CGTCTGGTCG GGGGAGAGCG TGGCGGCGTG
GTCGGCGCGA TTACCACTAT GGGTGTCGTC GTCGGTACTG ATATTCCGAT GTTCCTCGGC
GCCATGATTG CCGGTCCGTT GGGCGGCTGG GCGATCAAAC GCTTTGATGC GGCGGTGGAC
GGCAAAATCA AAAGCGGCTT TGAGATGCTG GTCAACAACT TCTCCGCCGG CATCATCGGC
ATGTTGCTGG CTGTCTTGTC GTTCCTGGCG ATCGGCCCAT TAGTTGAAGC GCTGTCGCGT
ATTCTGGCTG CCGGCGTGCA CCTGATGGTG CAGAACAACC TGCTGCCGCT GGCGTCGATT
TTCGTTGAGC CGGCGAAGAT TCTGTTCCTG AATAACGCCA TTAACCACGG TATCTTCTCG
CCGTTGGGTA TCCAACAGGC GACGGAAGCC GGCAAGTCGA TCTTCTTCTT GATCGAGGCT
AACCCCGGTC CGGGTATGGG CGTGCTGATG GCATACATGC TGTTCGGCCG CGGTAACGCT
AAACAGTCTG CGCCGGGTGC GGCTATCATC CACTTCCTCG GCGGGATCCA TGAAATTTAC
TTCCCGTATG TACTGATGAA CCCGCGTCTG ATCATCGCCG TTATTCTCGG CGGTATGACC
GGTGTGTTCA CGCTGGGCCT GCTGAATGGC GGCCTGGTAT CGCCGGCGTC GCCGGGTTCC
ATCCTGGCGG TACTGGCGAT GACGCCGAAA GGCGCGTATT TCGCCAATAT CACGGCGATT
GCCGCTGCTT TTGCGGTCTC TTTTGTGGTG TCGGCCATCC TGTTGAAAAG CAGCAAAGTG
AAGGATGATG ACGAGCTGGA GCAGGCGACT CGCCGTATGC AGGAGATGAA ATCCGCCTCC
AAAGGTCAGG CGGTCGGCGG CGTAAGCGGC GATCTGGGGA CCGTGCGTAA AATCATCGTT
GCTTGCGATG CGGGTATGGG GTCCAGCGCG ATGGGCGCCG GGGTACTGCG TAAAAAAGTG
CAGGATGCAG GTTTGCAGAC TATTTCAGTG ACCAACTGCG CCATCAATAA TCTGCCGGAC
GATGTGGATC TGGTGATTAC GCACCGCGAC CTGACGGAAC GCGCTATGCG TCATGCACCG
CAGGCACAGC ATATTTCGCT GACCAACTTC CTCGATAGCC ATCTGTACAA CGATTTGGTG
GCCCGCTTGC AGGCCGCGCA GTCCGACAGC GTTAAACCGG CTCAGGCGGC CCCAGCCGTT
GAACCGGCCG CCGCGCCGCA GACGCTGTTC CAACTGACGG AGAAAAACGT CTTCCTGAAC
TTGCAGGCGG CGGATAAAGA ACAGGCTATC CGCTTTGCCG GCGAACAGCT GGTAAAAGGC
GGGTATGTTG AGCCGGCGTA TGTCGATGCG ATGCTGGAGC GTGAGAAACT GACGTCGACC
TATTTGGGTG AGTCGATCGC CGTGCCGCAC GGAACGATTG AAGCCAAGGA CCGCGTACTG
AAAACCGGCG TGGTGTTCTG CCAGTACCCG CAAGGGGTGC GCTTCGGCGA CGATGAAGAT
GACGTGGCCC GTCTGGTCAT CGGTATCGCG GCTCGCAACA ACGAACATGT GCAGGTGATC
ACCAACCTCA CCAGTGCGCT GGATGATGAG TCAGTGATAG AACGGCTGGC TCAAACGGAG
AATGTGCAGG ATGTCCTTGA CCTGCTCTCC GGCAAGTCTC CTGCCTGA
|
|---|
| Protein sequence | MLSPDTKVKV QNFGRFLSNM VMPNIGAFIA WGIITALFIP TGWIPNATLA KLVGPMITYL
LPLLIGFTGG RLVGGERGGV VGAITTMGVV VGTDIPMFLG AMIAGPLGGW AIKRFDAAVD
GKIKSGFEML VNNFSAGIIG MLLAVLSFLA IGPLVEALSR ILAAGVHLMV QNNLLPLASI
FVEPAKILFL NNAINHGIFS PLGIQQATEA GKSIFFLIEA NPGPGMGVLM AYMLFGRGNA
KQSAPGAAII HFLGGIHEIY FPYVLMNPRL IIAVILGGMT GVFTLGLLNG GLVSPASPGS
ILAVLAMTPK GAYFANITAI AAAFAVSFVV SAILLKSSKV KDDDELEQAT RRMQEMKSAS
KGQAVGGVSG DLGTVRKIIV ACDAGMGSSA MGAGVLRKKV QDAGLQTISV TNCAINNLPD
DVDLVITHRD LTERAMRHAP QAQHISLTNF LDSHLYNDLV ARLQAAQSDS VKPAQAAPAV
EPAAAPQTLF QLTEKNVFLN LQAADKEQAI RFAGEQLVKG GYVEPAYVDA MLEREKLTST
YLGESIAVPH GTIEAKDRVL KTGVVFCQYP QGVRFGDDED DVARLVIGIA ARNNEHVQVI
TNLTSALDDE SVIERLAQTE NVQDVLDLLS GKSPA
|
|---|
| |