| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_03456 |
|---|
| Symbol | yicF |
|---|
| ID | 8112613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | - |
|---|
| Start bp | 3684356 |
|---|
| End bp | 3686038 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644849629 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003001202 |
|---|
| Protein GI | 251786898 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAT GGATGGCGAT ATTAATAAGT ATCTTGTGCT GGCAATCATC TGTGTGGGCG
GTCTGTCCGG CCTGGTCGCC AGCCAGAGCA CAGGAAGAAA TTTCCCGCCT GCAACAGCAA
ATAAAACAGT GGGACGATGA CTACTGGAAG GAAGGAAAAA GTGAGGTGGA AGACGGTGTT
TACGATCAGT TAAGCGCCCG TCTTACGCAG TGGCAACGCT GCTTTGGGAG CGAGCCCCGC
GACGTGATGA TGCCGCCTTT AAATGGTGCG GTTATGCATC CGGTTGCCCA TACGGGTGTA
CGCAAAATGG TGGATAAAAA CGCATTAAGT CTGTGGATGC GAGAACGTAG CGATCTTTGG
GTGCAGCCAA AAGTTGATGG CGTTGCGGTA ACCCTGGTTT ATCGGGACGG GAAACTGAAC
AAAGCAATCA GTCGCGGTAA TGGCCTGAAA GGCGAGGACT GGACGCAGAA AGTTAGCTTA
ATTTCCGCTG TGCCGCAAAC CGTTAGCGGG CCTTTAGCCA ACAGTACGCT TCAGGGGGAA
ATATTTCTCC AGCGCGAGGG GCATATCCAA CAACAAATGG GGGGAATAAA TGCCCGCGCA
AAAGTTGCTG GCTTGATGAT GCGCCAGGAC GATAGCGACA CGCTGAATTC TCTGGGCGTT
TTTGTCTGGG CATGGCCGGA TGGACCGCAG TTAATGTCTG ATCGTTTAAA AGAGCTGGCT
ACCGCAGGTT TTACTCTAAC GCAGACGTAT ACCCGTGCGG TGAAAAATGC TGATGAAGTT
GCGCGCGTAC GCAATGAGTG GTGGAAAGCG GAATTACCCT TCGTCACCGA TGGCGTAGTT
GTACGAGCGG CGAAAGAGCC AGAATCCCGC CATTGGCTAC CGGGCCAGGC AGAGTGGCTG
GTGGCCTGGA AATATCAACC TGTAGCTCAG GTTGCCGAAG TGAAGGCAAT TCAGTTTGCG
GTGGGTAAGA GCGGTAAAAT ATCGGTGGTT GCGTCACTCG CACCTGTCAT GCTGGATGAT
AAAAAAGTCC AGCGGGTGAA TATTGGTTCC GTCAGGCGCT GGCAGGAGTG GGATATTGCG
CCTGGTGATC AGATTCTCGT CAGCCTTGCC GGTCAGGGTA TTCCTCGCAT TGATGATGTG
GTGTGGCGCG GTGCAGAACG TACAAAACCG ACACCGCCAG AAAACCGCTT TAACTCGTTG
ACCTGCTACT TTGCTTCTGA TGTTTGTCAG GAACAGTTCA TTTCACGCTT AGTCTGGCTG
GGGGCAAAAC AGGTTCTTGG GCTGGATGGC ATTGGTGAGG CCGGCTGGCG CGCGCTGCAT
CAGACTCATC GCTTTGAGCA TATCTTTTCC TGGCTTTTAT TAACGCCAGA GCAATTACAG
AACACGCCGG GGATCGCGAA AAGTAAAAGT GCGCAGCTAT GGCATCAGTT TAATCTGGCT
CGTAAGCAGC CTTTTACTCG CTGGGTGATG GCAATGGGAA TACCGCTAAC CCGGGCGGCG
CTTAATGCCA GTGATGAACG GTCCTGGTCG CAACTTTTAT TTAGCACGGA GCAGTTCTGG
CAGCAGCTGC CGGGCACTGG ATCGGGGCGC GCCAGACAGG TTATTGAATG GAAGGAAAAT
GCGCAAATCA AGAAGCTGGG CAGTTGGCTG GCTGCCCAGC AGATCACAGG TTTTGAACCT
TAG
|
|---|
| Protein sequence | MKVWMAILIS ILCWQSSVWA VCPAWSPARA QEEISRLQQQ IKQWDDDYWK EGKSEVEDGV
YDQLSARLTQ WQRCFGSEPR DVMMPPLNGA VMHPVAHTGV RKMVDKNALS LWMRERSDLW
VQPKVDGVAV TLVYRDGKLN KAISRGNGLK GEDWTQKVSL ISAVPQTVSG PLANSTLQGE
IFLQREGHIQ QQMGGINARA KVAGLMMRQD DSDTLNSLGV FVWAWPDGPQ LMSDRLKELA
TAGFTLTQTY TRAVKNADEV ARVRNEWWKA ELPFVTDGVV VRAAKEPESR HWLPGQAEWL
VAWKYQPVAQ VAEVKAIQFA VGKSGKISVV ASLAPVMLDD KKVQRVNIGS VRRWQEWDIA
PGDQILVSLA GQGIPRIDDV VWRGAERTKP TPPENRFNSL TCYFASDVCQ EQFISRLVWL
GAKQVLGLDG IGEAGWRALH QTHRFEHIFS WLLLTPEQLQ NTPGIAKSKS AQLWHQFNLA
RKQPFTRWVM AMGIPLTRAA LNASDERSWS QLLFSTEQFW QQLPGTGSGR ARQVIEWKEN
AQIKKLGSWL AAQQITGFEP
|
|---|
| |