| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_01419 |
|---|
| Symbol | yncD |
|---|
| ID | 8116492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | - |
|---|
| Start bp | 1474435 |
|---|
| End bp | 1476537 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644847662 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002999235 |
|---|
| Protein GI | 251784931 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTT TTTCCGTCCG ACAGACCGTT TTGCCCGCAC TACTTGCCCT TTCCCCCGTT
GTTTTTGCCG CTGATGAACA AACCATGATT GTCAGTGCCG CACCGCAGGT GGTTTCCGAG
CTGGATACGC CAGCAGCAGT AAGCGTGGTG GATGGCGAGG AGATGCGCCT GGCAACACCG
CGCATTAACT TGTCCGAATC ACTGACCAGC GTGCCTGGTT TGCAGGTACA AAATCGGCAG
AACTATGCGC AAGATTTACA GCTGTCGATT CGCGGATTTG GCTCCCGCTC CACTTACGGA
ATTCGCGGTA TTCGCCTGTA TGTGGACGGT ATTCCCGCCA CCATGCCCGA CGGGCAAGGG
CAAACATCCA ACATCGATTT AAGCAGTGTG CAAAATGTGG AAGTGCTGCG TGGCCCCTTT
TCTGCCCTGT ATGGCAACGC GTCTGGCGGT GTAATGAATG TCACCACCCA GACCGGACAA
CAGCCACCAA CCATTGAAGC CAGTAGTTAC TACGGCAGTT TTGGCAGCTG GCGCTATGGG
CTGAAAGCAA CGGGCGCAAC GGGAGACGGC ACACAACCCG GCGATGTTGA TTACACCGTC
TCAACCACGC GTTTTACGAC CCACGGCTAT CGTGACCATA GTGGCGCACA GAAAAATTTA
GCCAATGCCA AACTGGGCGT ACGCATTGAT GAAGCCAGCA AATTAAGCCT GATTTTCAAT
AGTGTGGATA TCAAAGCAGA TGACCCAGGT GGGCTAACCA AAGCAGAATG GAAGGCGAAT
CCACAACAAG CGCCTCGTGC AGAACAGTAC GACACGCGAA AAACCATCAA GCAAACTCAG
GCTGGGTTGC GCTATGAACG TAGCCTGAGT TCGCGGGATG ATATGAGTGT GATGATGTAT
GCCGGAGAGC GAGAAACGAC CCAGTACCAG TCAATACCCA TGGCACCACA ACTTAACCCG
TCACATGCGG GCGGCGTGAT TACCCTGCAA CGCCATTACC AGGGAATAGA CAGCCGCTGG
ACACACCGTG GTGAACTGGG CGTTCCGGTC ACGTTCACTA CCGGCCTGAA CTACGAAAAC
ATGAGTGAAA ACCGCAAGGG CTACAATAAC TTCCGCCTGA ATAGCGGCAT GCCGGAGTAC
GGGCAAAAAG GTGAGTTGCG TCGCGACGAA CGCAATCTGA TGTGGAACAT CGATCCCTAT
TTACAGACGC AGTGGCAGCT GAGCGAAAAA CTGTCGCTGG ATGCTGACGT GCGCTACAGC
TCCGTGTGGT TTGATTCCAA CGACCATTAC GTTACTCCGG GTAACGGCGA TGACAGCGGT
GATGCCAGTT ATCATAAATG GCTACCTGCC GGTTCGTTAA AATATGCAAT GACCGATGCC
TGGAATATCT ATCTGGCAGC CGGGCGAGGT TTTGAAACGC CGACGATTAA TGAGCTGTCT
TATCGTGCTG ATGGGCAAAG CGGTATGAAC TTAGGTTTAA AACCATCCAC CAACGATACA
ATTGAGATCG GCAGTAAAAC GCGTATTGGT GATGGGCTGC TTAGTCTCGC ATTGTTTCAG
ACCGACACTG ATGATGAAAT TGTTGTCGAT AGCAGTAGCG GTGGGCGTAC GACTTACAAA
AATGCCGGAA AGACCCGTCG TCAAGGCGCT GAACTGGCAT GGGATCAACG TTTCGCAGGA
GATTTTCGCG TAAACGCGTC CTGGACCTGG CTTGATGCGA CCTATCGCAG CAATGTTTGC
AATGAACAGG ATTGTAACGG TAATCGGATG CCAGGGATCG CCCGTAATAT GGGCTTTGCG
TCGATAGGTT ATGTACCGGA AGATGGTTGG TATGCAGGCA CGGAAGCGCG TTATATGGGC
GATATTATGG CAGATGATGA AAATACGGCA AAAGCGCCGT CTTATACTCT CGTCGGCTTA
TTCACCGGGT ATAAATACAA TTACCACAAT TTAACTGTGG ATTTATTTGG TCGTGTCGAT
AATTTATTCG ATAAAGAATA CGTTGGTTCT GTCATTGTCA ATGAGTCAAA CGGGCGATAT
TACGAACCTT CGCCCGGACG AAATTATGGT GTCGGCATGA ATATTGCGTG GAGATTTGAG
TAA
|
|---|
| Protein sequence | MKIFSVRQTV LPALLALSPV VFAADEQTMI VSAAPQVVSE LDTPAAVSVV DGEEMRLATP
RINLSESLTS VPGLQVQNRQ NYAQDLQLSI RGFGSRSTYG IRGIRLYVDG IPATMPDGQG
QTSNIDLSSV QNVEVLRGPF SALYGNASGG VMNVTTQTGQ QPPTIEASSY YGSFGSWRYG
LKATGATGDG TQPGDVDYTV STTRFTTHGY RDHSGAQKNL ANAKLGVRID EASKLSLIFN
SVDIKADDPG GLTKAEWKAN PQQAPRAEQY DTRKTIKQTQ AGLRYERSLS SRDDMSVMMY
AGERETTQYQ SIPMAPQLNP SHAGGVITLQ RHYQGIDSRW THRGELGVPV TFTTGLNYEN
MSENRKGYNN FRLNSGMPEY GQKGELRRDE RNLMWNIDPY LQTQWQLSEK LSLDADVRYS
SVWFDSNDHY VTPGNGDDSG DASYHKWLPA GSLKYAMTDA WNIYLAAGRG FETPTINELS
YRADGQSGMN LGLKPSTNDT IEIGSKTRIG DGLLSLALFQ TDTDDEIVVD SSSGGRTTYK
NAGKTRRQGA ELAWDQRFAG DFRVNASWTW LDATYRSNVC NEQDCNGNRM PGIARNMGFA
SIGYVPEDGW YAGTEARYMG DIMADDENTA KAPSYTLVGL FTGYKYNYHN LTVDLFGRVD
NLFDKEYVGS VIVNESNGRY YEPSPGRNYG VGMNIAWRFE
|
|---|
| |