| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_01088 |
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| Symbol | rne |
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| ID | 8113111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli BL21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012892 |
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| Strand | - |
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| Start bp | 1143158 |
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| End bp | 1146343 |
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| Gene Length | 3186 bp |
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| Protein Length | 1061 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644847345 |
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| Product | hypothetical protein |
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| Protein accession | YP_002998918 |
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| Protein GI | 251784614 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00236445 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTAATCAA CGCAACTCAG CAGGAAGAGT TGCGCGTTGC CCTTGTAGAT
GGGCAGCGTC TGTATGACCT GGATATCGAA AGTCCAGGGC ACGAGCAGAA AAAGGCAAAC
ATCTACAAAG GTAAAATCAC CCGCATTGAA CCGAGTCTGG AAGCTGCTTT TGTTGATTAC
GGCGCTGAAC GTCACGGTTT CCTCCCACTA AAAGAAATTG CCCGCGAATA TTTCCCTGCT
AACTACAGTG CTCATGGTCG TCCCAACATT AAAGATGTGT TGCGTGAAGG TCAGGAAGTC
ATTGTTCAGA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCATTAAC CACCTTTATC
AGTCTGGCGG GTAGCTATCT GGTTCTGATG CCGAACAACC CGCGCGCGGG TGGCATTTCT
CGCCGTATCG AAGGCGACGA CCGTACCGAA TTAAAAGAAG CACTGGCAAG CCTTGAACTG
CCGGAAGGCA TGGGGCTTAT CGTGCGCACC GCTGGCGTCG GCAAATCTGC TGAGGCGCTG
CAATGGGATT TAAGCTTCCG TCTGAAACAC TGGGAAGCCA TCAAAAAAGC CGCTGAAAGC
CGCCCGGCCC CGTTCCTGAT TCATCAGGAG AGCAACGTAA TCGTTCGCGC ATTCCGCGAT
TACTTACGTC AGGACATCGG CGAAATCCTT ATCGATAACC CGAAAGTGCT CGAACTGGCA
CGTCAGCATA TCGCTGCATT AGGTCGCCCG GATTTCAGCA GCAAAATCAA ACTGTACACC
GGCGAGATCC CGCTGTTCAG CCACTACCAG ATCGAGTCAC AGATCGAGTC CGCCTTCCAG
CGTGAAGTTC GTCTGCCGTC TGGTGGTTCC ATTGTTATCG ACAGCACCGA AGCGTTAACG
GCCATCGACA TCAACTCCGC ACGCGCGACC CGCGGCGGCG ATATCGAAGA AACCGCGTTT
AACACTAACC TCGAAGCTGC CGATGAGATT GCTCGTCAGC TGCGCCTGCG TGACCTCGGC
GGCCTGATTG TTATCGACTT CATCGACATG ACGCCAGTAC GCCACCAGCG TGCGGTAGAA
AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGTGCGCGTA TTCAAATCAG CCATATTTCT
CGCTTTGGCC TGCTGGAAAT GTCCCGTCAG CGCCTGAGCC CATCACTGGG TGAATCCAGC
CATCACGTCT GCCCGCGCTG CTCCGGTACC GGTACCGTGC GTGACAACGA ATCGCTGTCG
CTCTCTATTC TGCGTCTGAT CGAAGAAGAA GCGCTGAAAG AGAACACCCA GGAAGTTCAC
GCCATTGTTC CTGTGCCAAT CGCTTCTTAT CTGCTGAATG AAAAACGTTC TGCGGTGAAT
GCCATTGAAA CGCGTCAGGA CGGTGTTCGC TGCGTGATTG TGCCAAACGA TCAGATGGAA
ACCCCGCACT ACCACGTGCT GCGCGTGCGT AAAGGGGAAG AAACGCCGAC CTTAAGCTAC
ATGCTGCCGA AGCTGCATGA AGAAGCGATG GCGCTGCCGT CTGAAGAAGA GTTCGCTGAA
CGTAAGCGTC CGGAACAACC TGCGCTGGCA ACCTTTGCCA TGCCGGATGT GCCGCCAGCG
CCAACCCCAG CTGAACCTGC CGCGCCTGTC GTAGCCCCAG CACCTAAATC TGCACCGGCA
ACACCAGCCG CTCCTGCCCA ACCTGGGCTG TTGAGCCGCT TCTTCGGCGC ACTGAAAGCG
CTGTTCAGCG GTGGTGAAGA AACCAAACCG TCCGAGCAAC CAACACCGAA AGCAGAAGCG
AAACCGGAAC GTCAACAGGA TCGTCGCAAG CCTCGTCAGA ACAACCGCCG TGACCGTAAT
GAGCGCCGCG ACACCCGTAG TGAACGTACT GAAGGCAGCG ATAATCGCGA AGAAAACCGT
CGTAATCGTC GCCAGGCACA GCAGCAGACT GCCGAGACGC GTGAGAGCCG TCAGCAGGTT
GAGGTAACGG AAAAAGCGCG TACCACCGAC GAGCAGCAAG CGCCGCGTCG TGAACGTAGC
CGCCGCCGTA ATGATGATAA ACGTCAGGCG CAACAAGAAG CGAAGGCGCT GAATGTTGAA
GAGCAATCTG TTCAGGAAAC CGAACAGGAA GAACGTGTAC GTCCGGTTCA GCCGCGTCGT
AAACAGCGTC AGCTCAATCA GAAAGTGCGT TACGAGCAAA GCGTAGCCGA AGAAGCGGTA
GTCGCACCGG TGGTTGAAGA AACTGTCGCT GCCGAACCAA TTGTTCAGGA AGCGCCAGCT
CCACGCACAG AACTGGTGAA AGTCCCGCTG CCAGTCGTAG CGCAAACTGC ACCAGAACAG
CAAGAAGAGA ACAATGCTGA TAACCGTGAC AACGGTGGCA TGCCGCGTCG TTCTCGCCGC
TCGCCTCGTC ACCTGCGCGT AAGTGGTCAG CGTCGTCGTC GCTATCGTGA CGAGCGTTAT
CCAACCCAGT CGCCAATGCC GTTGACCGTA GCGTGCGCGT CTCCGGAACT GGCCTCTGGC
AAAGTCTGGA TCCGCTATCC AATTGTACGT CCGCAAGATG TACAGGTTGA AGAGCAGCGC
GAACAGGAAG AAGTACATGT GCAGCCGATG GTGACTGAGG TCCCTGTCGC CGCCGCTATC
GAACCGGTTG TTAGCGCGCC AGTTGTTGAA GAAGTGGCCG GTGTCGTAGA AGCCCCCGTT
CAGGTTGCCG AACCGCAACC GGAAGTGGTT GAAACGACGC ATCCTGAAGT GATTGCTGCC
GCGGTAACTG AACAGCCGCA GGTGATTACC GAGTCTGATG TTGCCGTAGC CCAGGAAGTT
GCAGAACAAG CAGAACCGGT GGTTGAACCG CAGGAAGAGA CGGCAGATAT TGAAGAAGTT
GTCGAAACTG CTGAGGTTGT AGTTGCTGAA CCTGAAGTTG TTGCTCAACC TGCCGCGCCA
GTAGTCGCTG AAGTCGCAGC AGAAGTTGAA ACGGTAGCTG CGGTCGAACC TGAGGTCACC
GTTGAGCATA ACCACGCTAC CGCGCCAATG ACGCGCGCTC CAGCACCGGA ATATGTTCCG
GAGGCACCGC GTCACAGTGA CTGGCAGCGC CCTACTTTTG CCTTCGAAGG TAAAGGTGCC
GCAGGTGGTC ATACGGCAAC ACATCATGCC TCTGCTGCTC CTGCGCGTCC GCAACCTGTT
GAGTAA
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| Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY
GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL
QWDLSFRLKH WEAIKKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVLELA
RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE
NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRSAVN AIETRQDGVR CVIVPNDQME
TPHYHVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEFAE RKRPEQPALA TFAMPDVPPA
PTPAEPAAPV VAPAPKSAPA TPAAPAQPGL LSRFFGALKA LFSGGEETKP SEQPTPKAEA
KPERQQDRRK PRQNNRRDRN ERRDTRSERT EGSDNREENR RNRRQAQQQT AETRESRQQV
EVTEKARTTD EQQAPRRERS RRRNDDKRQA QQEAKALNVE EQSVQETEQE ERVRPVQPRR
KQRQLNQKVR YEQSVAEEAV VAPVVEETVA AEPIVQEAPA PRTELVKVPL PVVAQTAPEQ
QEENNADNRD NGGMPRRSRR SPRHLRVSGQ RRRRYRDERY PTQSPMPLTV ACASPELASG
KVWIRYPIVR PQDVQVEEQR EQEEVHVQPM VTEVPVAAAI EPVVSAPVVE EVAGVVEAPV
QVAEPQPEVV ETTHPEVIAA AVTEQPQVIT ESDVAVAQEV AEQAEPVVEP QEETADIEEV
VETAEVVVAE PEVVAQPAAP VVAEVAAEVE TVAAVEPEVT VEHNHATAPM TRAPAPEYVP
EAPRHSDWQR PTFAFEGKGA AGGHTATHHA SAAPARPQPV E
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