Gene B21_00898 details

Gene Information

• Locus tag: B21_00898
• Symbol: cydD
• ID: 8113378
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli BL21
• Kingdom: Bacteria
• Replicon accession: NC_012892
• Strand: -
• Start bp: 933663
• End bp: 935429
• Gene Length: 1767 bp
• Protein Length: 588 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644847160
• Product: hypothetical protein
• Protein accession: YP_002998733
• Protein GI: 251784429
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.910404
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAT CTCGTCAAAA AGAGTTAACC CGCTGGTTAA AACAGCAAAG CGTCATCTCC 
CAACGTTGGC TGAATATTTC TCGTCTGCTG GGCTTTGTGA GCGGCATATT GATCATTGCC 
CAGGCCTGGT TCATGGCGCG AATTCTGCAA CATATGATTA TGGAGAATAT TCCCCGTGAA 
GCCCTGCTGC TTCCCTTTAC GTTACTGGTT CTGACCTTTG TACTGCGCGC ATGGGTGGTC 
TGGTTACGCG AACGGGTGGG TTATCACGCC GGGCAGCATA TCCGCTTTGC CATCCGCCGT 
CAGGTTCTCG ACCGTCTGCA ACAAGCAGGG CCAGCGTGGA TTCAGGGTAA ACCTGCGGGG 
AGCTGGGCGA CGCTGGTACT CGAGCAAATT GACGATATGC ATGATTACTA TGCACGCTAT 
CTGCCGCAAA TGGCGCTGGC AGTGTCGGTG CCGTTGCTGA TTGTGGTGGC GATCTTCCCC 
TCTAACTGGG CTGCGGCGCT CATTCTGCTG GGCACAGCAC CGCTAATTCC GTTGTTTATG 
GCGCTGGTTG GAATGGGGGC TGCCGATGCT AACCGACGTA ACTTTCTCGC TCTTGCTCGC 
TTAAGTGGGC ATTTCCTCGA TCGCCTGCGC GGCATGGAAA CATTGCGTAT TTTTGGTCGT 
GGTGAAGCTG AAATTGAAAG TATTCGTTCT GCTTCGGAAG ATTTCCGCCA ACGGACAATG 
GAAGTGCTAC GACTGGCGTT TTTATCCTCC GGCATTCTCG AATTTTTTAC CTCGCTGTCA 
ATTGCTCTGG TGGCGGTCTA CTTTGGTTTT TCCTATCTCG GCGAGCTGGA TTTTGGTCAC 
TACGATACTG GCGTGACGCT GGCTGCGGGT TTTCTGGCCC TGATCCTTGC GCCAGAGTTT 
TTCCAGCCAT TACGCGATCT CGGTACGTTT TATCATGCTA AAGCCCAGGC TGTTGGTGCA 
GCTGACAGTC TGAAAACGTT TATGGAAACC CCGCTCGCCC ATCCGCAGCG CGGTGAGGCG 
GAATTAGCAT TGACCGATCC GCTGACCATT GAGGCCGAGG ATCTGTTTAT CACGTCGCCG 
GAAGGTAAAA CGCTGGCCGG ACCGCTGAAC TTTACTTTGC CAGCAGGCCA ACGTGCAGTG 
TTGGTTGGTC GCAGCGGTTC AGGTAAAAGC TCACTGCTGA ACGCGCTTTC TGGTTTTCTC 
TCATATCAGG GATCATTACG AATCAACGGG ATAGAATTAC GCGATTTATC ACCAGAATCA 
TGGCGTAAAC ATCTCTCCTG GGTTGGGCAA AACCCACAAT TACCGGCAGC AACATTACGG 
GATAACGTAC TACTGGCGCG ACCTGATGCC AGCGAACAAG AATTACAAGC AGCGCTGGAT 
AACGCCTGGG TCAGCGAGTT TCTACCGCTC CTGCCACAAG GCGTTGATAC GCCTGTTGGC 
GACCAGGCTG CCCGCCTTTC CGTGGGGCAG GCGCAGCGCG TGGCGGTGGC CCGTGCGTTA 
CTAAATCCCT GTTCGCTATT ACTGTTGGAT GAACCCGCTG CCAGCCTTGA TGCTCACAGT 
GAACAGCGCG TAATGGAGGC GCTGAATGCC GCCTCTCTGC GCCAGACAAC GTTAATGGTC 
ACCCACCAGT TAGAAGATCT TGCTGACTGG GATGTCATTT GGGTTATGCA GGATGGCCGG 
ATTATTGAGC AAGGACGTTA CGCGGAATTA AGTGTGGCTG GTGGCCCATT CGCCACATTA 
CTGGCCCATC GTCAGGAGGA GATTTAA 

 

Protein sequence

MNKSRQKELT RWLKQQSVIS QRWLNISRLL GFVSGILIIA QAWFMARILQ HMIMENIPRE 
ALLLPFTLLV LTFVLRAWVV WLRERVGYHA GQHIRFAIRR QVLDRLQQAG PAWIQGKPAG 
SWATLVLEQI DDMHDYYARY LPQMALAVSV PLLIVVAIFP SNWAAALILL GTAPLIPLFM 
ALVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRIFGR GEAEIESIRS ASEDFRQRTM 
EVLRLAFLSS GILEFFTSLS IALVAVYFGF SYLGELDFGH YDTGVTLAAG FLALILAPEF 
FQPLRDLGTF YHAKAQAVGA ADSLKTFMET PLAHPQRGEA ELALTDPLTI EAEDLFITSP 
EGKTLAGPLN FTLPAGQRAV LVGRSGSGKS SLLNALSGFL SYQGSLRING IELRDLSPES 
WRKHLSWVGQ NPQLPAATLR DNVLLARPDA SEQELQAALD NAWVSEFLPL LPQGVDTPVG 
DQAARLSVGQ AQRVAVARAL LNPCSLLLLD EPAASLDAHS EQRVMEALNA ASLRQTTLMV 
THQLEDLADW DVIWVMQDGR IIEQGRYAEL SVAGGPFATL LAHRQEEI