Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | B21_00366 |
Symbol | ribD |
ID | 8114801 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli BL21 |
Kingdom | Bacteria |
Replicon accession | NC_012892 |
Strand | + |
Start bp | 398757 |
End bp | 399860 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644846650 |
Product | hypothetical protein |
Protein accession | YP_002998223 |
Protein GI | 251783919 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0117] Pyrimidine deaminase |
TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain [TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.559901 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAGGACG AGTATTACAT GGCGCGGGCG CTAAAGCTGG CGCAACGAGG ACGTTTTACC ACGCATCCCA ACCCGAATGT CGGGTGCGTC ATTGTCAAAG ATGGCGAAAT TGTCGGTGAA GGTTACCACC AACGTGCGGG TGAACCACAT GCCGAAGTAC ACGCGTTGCG TATGGCGGGT GAAAAAGCCA AAGGTGCGAC CGCCTATGTC ACACTCGAAC CCTGTAGCCA TCATGGTCGT ACGCCACCGT GCTGTGACGC ACTCATCGCC GCTGGCGTAG CGCGCGTGGT TGCCTCGATG CAAGATCCTA ACCCGCAGGT CGCTGGGCGT GGACTTTACC GTCTGCAACA GGCTGGCATT GACGTCAGCC ACGGCCTGAT GATGAGTGAA GCCGAGCAAT TGAATAAAGG CTTTCTCAAG CGGATGCGCA CCGGCTTTCC TTATATTCAG TTAAAACTTG GCGCATCGCT TGATGGTCGC ACGGCGATGG CGAGCGGCGA AAGCCAGTGG ATCACTTCGC CCCAGGCGCG GCGTGATGTA CAACTACTGC GCGCGCAAAG TCATGCCATT TTAACCAGCA GCGCCACGGT GCTGGCGGAT GATCCTGCCT TAACGGTGCG TTGGTCTGAA CTGGATGAAC AAACTCAGGC GCTCTATCCG CAACAAAATC TCCGTCAGCC GATACGTATT GTGATTGATA GCCAAAATCG CGTGACGCCG GTACATCGCA TTGTGCAGCA GCCCGGCGAA ACCTGGTTCG CGCGTACGCA GGAAGATTCT CGTGAGTGGC CGGAAACGGT GCGTACCTTG CTGATTCCAG CGCATAAAGG TCATCTGGAT CTGGTTGTAC TGATGATGCA ACTGGGTAAA CAGCAAATTA ACAGCATCTG GGTGGAAGCG GGGCCAACGC TCGCTGGCGC ATTGCTGCAG GCGGGTTTAG TCGATGAGCT GATTGTCTAT ATCGCACCTA AACTATTAGG CAGCGACGCC CGTGGATTAT GCTCGCTGCC AGGGCTTGAG AAATTAGCCG ACGCCCCCCA ATTTAAATTC AAAGAGATAC GTCATGTAGG CCCGGATGTT TGCCTGCATT TAGTAGGTGC ATGA
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Protein sequence | MQDEYYMARA LKLAQRGRFT THPNPNVGCV IVKDGEIVGE GYHQRAGEPH AEVHALRMAG EKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVASM QDPNPQVAGR GLYRLQQAGI DVSHGLMMSE AEQLNKGFLK RMRTGFPYIQ LKLGASLDGR TAMASGESQW ITSPQARRDV QLLRAQSHAI LTSSATVLAD DPALTVRWSE LDEQTQALYP QQNLRQPIRI VIDSQNRVTP VHRIVQQPGE TWFARTQEDS REWPETVRTL LIPAHKGHLD LVVLMMQLGK QQINSIWVEA GPTLAGALLQ AGLVDELIVY IAPKLLGSDA RGLCSLPGLE KLADAPQFKF KEIRHVGPDV CLHLVGA
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