Gene Dd703_3958 details

Gene Information

• Locus tag: Dd703_3958
• ID: 8087344
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: -
• Start bp: 4587013
• End bp: 4588836
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644838050
• Product: GTP-binding protein TypA
• Protein accession: YP_002989533
• Protein GI: 242241352
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.41781
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCGAAA ATTTGCGTAA CATCGCTATT ATTGCGCACG TTGACCATGG AAAAACCACC 
CTGGTTGACA AACTGCTGCA ACAATCCGGA ACGCTGGGTG AGCGTACAGA ACTTACCGAA 
CGTGTGATGG ACTCCAATGA CCTTGAAAAA GAACGCGGGA TTACCATCCT CGCGAAAAAC 
ACCGCCATTA ACTGGAATGG CTATCGCATC AATATCGTAG ACACCCCAGG ACACGCCGAC 
TTTGGCGGTG AGGTGGAGCG TGTGATGTCC ATGGTGGATT CCGTATTACT GCTGGTGGAT 
GCGATGGACG GCCCGATGCC GCAAACGCGC TTCGTGACCC AGAAAGCCTT TGCCTACGGA 
TTGAAGCCCA TCGTGGTCAT CAACAAGGTT GACCGCCCCG GCGCCCGCCC GGACTGGGTT 
GTGGATCAGG TTTTCGACTT GTTCGTCAAT CTGGGCGCTA CCGACGAGCA ACTGGACTTC 
CCGATTGTTT ACGCTTCCGC GTTGAACGGC ATTGCCGGTC TGGATCATAA CGACATGGCG 
GAAGACATGA CGCCGCTGTT TGAAGCGATC GTAAAACATG TTGAAGCGCC AAATGTGGAT 
CTCAACGGCC CATTCCAAAT GCAGATCTCC CAGTTGGATT ACAACAACTA CGTGGGTGTC 
ATCGGTATTG GTCGTATCAA GCGCGGCGTG GTGAAGCCGA ATCAGCAGGT CAGCATCATC 
GACAGCACCG GTAAAGTGCG TAATGCCAAA GTCGGCCAGG TGCTGGGCCA TCTGGGGCTG 
CAACGTATCG AGAGCGACAA GGCGGAAGCG GGCGACATCA TTGCGCTTAC CGGCCTTGGC 
GATCTGAACA TCTCCGATAC CGTGTGCGAC ACCGCGAATG TGGAAGCGCT GCCGGCTCTG 
TCTGTGGATG AACCGACAGT AACCATGTTC TTCTGCGTTA ATACCTCGCC TTTCTGCGGT 
AAAGAAGGCA AGTTCGTGAC TTCTCGCCAG ATTCTGGATC GTTTGCGTAA GGAATTGGTG 
CATAACGTCG CACTGCGCGT AGAAGAAACC GAAGACCCGG ATGCTTTCCG TGTGTCCGGT 
CGTGGTGAGC TGCACCTGTC TGTTCTGATT GAAAACATGC GTCGTGAAGG TTTCGAACTG 
GCGGTTTCCC GTCCGAAAGT TATCTTCCGT ACCATCGACG GTCGCCGCCA GGAACCGTTT 
GAACAAGTTA CTGTGGATAT CGAAGAACAG CACCAGGGTT CCGTCATGGA AGCACTGGGT 
CTGCGTAAAG GCGAAATGCG CGACATGATC CCGGATGGCA AGGGACGTGT TCGCCTGGAT 
TACGTCATCC CGAGCCGTGG TTTGATCGGC TTCCGTACCG ATTTTATGAC CATGACGTCC 
GGTACCGGTC TGCTGTATTC CACGTTCAGT CACTACGATG ACATCCGCCC AGGTGAAATC 
GGTCAGCGTC AGAACGGCGT ACTGATCTCC AACGGTCAGG GTAAAGCAGT CGCCTATGCG 
CTGTTCAGCC TGCAGGATCG CGGCAAATTG TTCCTGGGTC ACGGCGCCGA AGTGTATGAA 
GGCCAGATTA TTGGTATCCA TACTCGTTCC AACGACCTGA CGGTAAACTG CCTGACCGGT 
AAAAAGCTGA CCAACATGCG TGCCTCCGGT ACGGATGAGG CCACCGTGCT GGTTCCGCCG 
GTGAAAATGT CGCTGGAGCA GGCGCTGGAG TTTATTGACG ATGACGAGCT GGTGGAAGTT 
ACCCCGCAGT CGATTCGTCT GCGCAAGCGC CACCTGACGG AAAACGATCG CCGTCGCGCC 
AATCGTTCCA GCAAGGAAGA GTGA 

 

Protein sequence

MIENLRNIAI IAHVDHGKTT LVDKLLQQSG TLGERTELTE RVMDSNDLEK ERGITILAKN 
TAINWNGYRI NIVDTPGHAD FGGEVERVMS MVDSVLLLVD AMDGPMPQTR FVTQKAFAYG 
LKPIVVINKV DRPGARPDWV VDQVFDLFVN LGATDEQLDF PIVYASALNG IAGLDHNDMA 
EDMTPLFEAI VKHVEAPNVD LNGPFQMQIS QLDYNNYVGV IGIGRIKRGV VKPNQQVSII 
DSTGKVRNAK VGQVLGHLGL QRIESDKAEA GDIIALTGLG DLNISDTVCD TANVEALPAL 
SVDEPTVTMF FCVNTSPFCG KEGKFVTSRQ ILDRLRKELV HNVALRVEET EDPDAFRVSG 
RGELHLSVLI ENMRREGFEL AVSRPKVIFR TIDGRRQEPF EQVTVDIEEQ HQGSVMEALG 
LRKGEMRDMI PDGKGRVRLD YVIPSRGLIG FRTDFMTMTS GTGLLYSTFS HYDDIRPGEI 
GQRQNGVLIS NGQGKAVAYA LFSLQDRGKL FLGHGAEVYE GQIIGIHTRS NDLTVNCLTG 
KKLTNMRASG TDEATVLVPP VKMSLEQALE FIDDDELVEV TPQSIRLRKR HLTENDRRRA 
NRSSKEE