| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3947 |
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| Symbol | ligB |
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| ID | 8087333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | - |
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| Start bp | 4573219 |
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| End bp | 4574946 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644838039 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_002989522 |
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| Protein GI | 242241341 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCAGG GATATTTGCC GATAGCGATA TGGTCGATTG CAGTTTGGGC CGGTTGTACC
GGGGCTTGCG TCTCTTGTCC GTCGTGGTCG GCACTGCGGG CGGAGCAGGA AATGGAACGG
CTTGGGCATC AATTGGCGGT ATGGGATAGG GCTTATTACG GCGCGGGTGA AAGCCAGATC
GATGACCACA CTTACGATCA ACTGAGAAAA CGGCTGGAGA CATGGCAAGC CTGTTTTCAC
GCCGATCAAA CCGCTTTTCC CATACCGTTG CCGACAGAGG GAAAAACGCC GCACCCAGTG
GCGCATACCG GGCTGAAAAA ACTGTCGGAG GCTGGCGAGT TACGGCGTTG GATTGCGCAG
CATCGCGGTC TCTGGGTTCA ACCCAAAATT GACGGCGTCG CCGTTACGCT GGTGTATGAG
CAGGGCAAAC TGGTATCCGC CGTCAGCCGG GGAAATGGGT ATCGGGGTGA GGACTGGACG
GAAAAAGTGC GCCGGATGCC GCAAGTGCCG CAACAATTGC CGACGGCACC CGATCAGCTG
GTGTTGCAAG GGGAGCTTTA TCTCGGTATG CCCGGTCATC GCCAGCAGCA GGATGGCGGC
GCGAATGCCC GAGCACGGGT GGCCGGCGAA ATGCGCCGTA GCCAGCCCTC ATCGCTGGCA
TCCCGCATTG GCGTTTTTGT CTGGGAGTGG CCTGATGGGC CGCAAAGCAT GCCGGAACGT
TTATCCCAAC TGCGGAGTCT GGGGTTTGAA ATGACGGAGC GCTACACCCA GCCTATCACT
ACGCTGGAAG ACGCTGCCCG CTGGCGCGAA CGCTGGTACC GGGAACCACT GCCGTTTGCG
ACGGACGGCG TAGTGCTGCG ACAGGCACAG GAGCCTGCGG CGCGCTACTG GCAGAATAAA
CCGGCGGAAT GGGCGGTGGC CTGGAAGTAT CCGTTAACCC GTCTGGTGAC GGAAGTGGAG
GGCGTTGAGA TCGCGGTCGG GCGCACCGGT AACATGGCCG TGGTACTGAC GTTGCAGCCA
CTGACGCTGG ACGACAAAAC GATTAGACGG GTCAATGTCG GGTCAATATC CCGCTGGCGG
CAGTGGGATG TACTGCCCGG CGATCAGGTC AGCATCGGTT TGGCGGGGCA AGGTATTCCC
CGATTAGATG CCGTCGTGTG GCGTACATCG GTGCGGGAAC CGATGTCGGT GCCTGAAAAC
GTCGGTTTCA GTGAATTTAC CTGCCTGACA TGGCGTGAAG GTTGTCGGTC GCAGTTTATT
GCCCGGCTGG TCTGGCTGAG CGGGAAGCGC GGGCTGGGGC TGACAGGTGT CGGGGAAGGG
GTTTGGCAAC GTCTGGTTTT GCGCGGAATG TTACCTGATG TGGTGTCGTG GCTGGCGTTG
ACGCCGGCAC AGCTAATCGG TCTCGGCGGG TTGGGGGCAA CGCAGGGTGA AAAAGTGTAT
CAGCAGTTTC AACGCGCGCG GCGGCAGCCA CTTTCACGAT GGTTGATGGC GTTGGGGATC
CCCGTTCCCC GTGCTGCGCA GGGCGCCTTG CATGGGGTGT CTTTGATTGC TCTGCAGCAG
CGTTCACTGG CGGAGTGGCG GCAATTTTCG GGCATCGGCG TCGCCCGGGC TGGGAATATT
CGAGATTTTT TGCATCAGCC GGAGATTGCC GCACTGTTGC AGTGGCTGGT ACGGCAAGGT
ATTGGCGCTA GCACTCTGGA TGAAGAGACG TTTCGTCAGG TGGATTAA
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| Protein sequence | MRQGYLPIAI WSIAVWAGCT GACVSCPSWS ALRAEQEMER LGHQLAVWDR AYYGAGESQI
DDHTYDQLRK RLETWQACFH ADQTAFPIPL PTEGKTPHPV AHTGLKKLSE AGELRRWIAQ
HRGLWVQPKI DGVAVTLVYE QGKLVSAVSR GNGYRGEDWT EKVRRMPQVP QQLPTAPDQL
VLQGELYLGM PGHRQQQDGG ANARARVAGE MRRSQPSSLA SRIGVFVWEW PDGPQSMPER
LSQLRSLGFE MTERYTQPIT TLEDAARWRE RWYREPLPFA TDGVVLRQAQ EPAARYWQNK
PAEWAVAWKY PLTRLVTEVE GVEIAVGRTG NMAVVLTLQP LTLDDKTIRR VNVGSISRWR
QWDVLPGDQV SIGLAGQGIP RLDAVVWRTS VREPMSVPEN VGFSEFTCLT WREGCRSQFI
ARLVWLSGKR GLGLTGVGEG VWQRLVLRGM LPDVVSWLAL TPAQLIGLGG LGATQGEKVY
QQFQRARRQP LSRWLMALGI PVPRAAQGAL HGVSLIALQQ RSLAEWRQFS GIGVARAGNI
RDFLHQPEIA ALLQWLVRQG IGASTLDEET FRQVD
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