| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3731 |
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| Symbol | rpoB |
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| ID | 8087101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | - |
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| Start bp | 4323975 |
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| End bp | 4328003 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644837809 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002989308 |
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| Protein GI | 242241127 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA GCGTCCGCAA
GTGTTGGACA TACCTTATCT CCTTTCTATC CAGCTTGACT CGTTCCAGAA GTTTATCGAG
CAAGATCCGG AAGGTCAGTA CGGACTGGAA GCTGCGTTCC GTTCTGTTTT CCCCATCCAG
AGCTATAGCG GCAGTGCAGA ACTGCAATAC GTAAGCTATC GTCTGGGCGA GCCGGTATTT
GACGTTAAAG AATGTCAAAT TCGCGGCGTA ACCTTTTCTG CGCCGTTGCG CGTTAAGCTG
CGTCTGGTGA TCTACGAGCG CGAAGCGCCG GAAGGCACCG TAAAAGACAT CAAAGAACAA
GAAGTGTACA TGGGCGAAAT CCCGCTCATG ACCGACAACG GTACCTTCGT GATCAACGGT
ACCGAGCGCG TTATCGTTTC CCAGTTGCAC CGTAGTCCGG GCGTGTTCTT CGACAGCGAC
AAGGGCAAAA CCCACTCTTC CGGTAAAGTG CTGTATAACG CACGCATTAT TCCTTACCGT
GGTTCTTGGC TGGACTTCGA GTTCGATCCG AAAGACAACC TGTTTGTGCG TATCGACCGC
CGTCGTAAAT TGCCGGCGAC TATCATTCTG CGTGCACTGA ATTACTCCAC TGAAGACATT
CTGGGGCTGT TTTTCGACAA GATTGTTTAC GAAATCAACA ATAACAAGCT GCAAATGGAG
CTTGTTCCCG AACGTCTGCG CGGTGAAACC GCCTCTTTTG ATATTGAGGC TGACGGCAAG
GTTTACGTCG AAAAAGGTCG CCGCATCACG GCGCGCCATA TCCGTCAGTT GGAAAAAGAC
GGCATCGAAC GTATTGAAGT GCCGGTGGAA TACATCGCGG GCAAAGTGTT GGCCAAAGAT
TATGTCGATA CCAGCACTGG CGAAGTTATC GCTATGGCGA ACATGGAACT GTCGCTGGAT
CTGTTGGCTC GTCTGAGCCA GGCCGGGCAC AAGCGCATCG AAACTCTGTT CACCAACGAT
CTGGATCACG GTCCATACAT GTCCGAAACG GTGCGTGTTG ATCCGACTAA TGATCGTCTG
AGCGCGTTGG TTGAAATCTA CCGCATGATG CGTCCGGGCG AGCCGCCGAC ACGCGAAGCG
GCGGAAAGCC TGTTCGAAAA CCTGTTCTTC TCCGAAGACC GCTACGATCT GTCTGCGGTT
GGCCGCATGA AGTTTAACCG CTCCCTGTTG CGCGACGCGA TCGAAGGATC CGGCATCCTG
AGCAAAGAAG ACATCATTGA TGTCATGAAA AAGCTCATCG ATATCCGTAA CGGTAAAGGC
GAGGTCGATG ATATCGACCA CCTGGGCAAC CGTCGTATCC GCTCCGTGGG CGAAATGGCG
GAAAACCAGT TCCGCGTCGG TCTGGTGCGC GTAGAACGTG CGGTGAAAGA GCGTCTGTCT
CTGGGCGATT TGGACACCCT GATGCCGCAG GACATGATCA ACGCCAAGCC GATTTCCGCG
GCGGTGAAAG AGTTCTTCGG TTCCAGCCAG CTGTCCCAGT TTATGGATCA GAACAACCCG
CTGTCCGAAA TTACGCATAA ACGCCGTATT TCCGCATTGG GCCCCGGCGG TCTGACCCGT
GAGCGTGCCG GCTTCGAAGT GCGAGACGTT CACCCGACCC ACTATGGTCG TGTATGTCCG
ATCGAAACGC CGGAAGGTCC GAACATCGGT CTGATCAACT CGCTGTCTGT GTACGCACAG
ACCAACGAAT ACGGTTTCCT GGAAACCCCG TATCGCCGTG TACGCGATGG CGTGGTGACT
GACGAAATTC ATTACCTGTC TGCGATTGAA GAAGGCAACT ACGTTATTGC TCAGGCGAAC
ACCAACCTGG ATGACGAAGG TCACTTCATC GACGAACTGG TGACTTGCCG TAGCAAGGGC
GAGTCCAGCT TGTTCAGCCG CGATCAGGTT GACTACATGG ACGTTTCCAC TCAGCAGGTG
GTCTCTGTGG GGGCGTCCCT GATCCCGTTC CTGGAACACG ATGACGCCAA CCGCGCCCTG
ATGGGTGCGA ACATGCAACG TCAGGCGGTT CCGACCCTGC GCGCCGACAA GCCGCTGGTG
GGCACCGGTA TGGAACGTGC TGTTGCGGTT GACTCCGGTG TTACCGCGGT CGCTAAACGT
GGCGGTACCG TACAGTATGT CGACGCATCC CGTATTGTTA TCAAGGTGAA TGAAGACGAG
ATGTATCCGG GTGAAGCGGG CATCGACATC TACAACCTGA CCAAATACAC CCGTTCCAAC
CAGAACACCT GCATCAACCA GATGCCGTGT GTGTCGCTGG GCGAGCCGGT TGAGCGCGGA
GACGTATTGG CCGACGGCCC GTCTACCGAT CTCGGTGAGC TGGCGCTGGG TCAGAACATG
CGCGTCGCGT TCATGCCCTG GAACGGCTAC AACTTCGAAG ACTCCATCCT CGTTTCCGAG
CGTGTAGTGC AGGAAGATCG TTTCACCACC ATCCACATTC AGGAATTGGC GTGCGTGTCC
CGCGACACCA AGCTGGGGCC TGAAGAGATT ACGGCCGATA TCCCGAACGT GGGTGAGGCT
GCGCTCTCCA AACTGGATGA ATCCGGCATC GTTTACATCG GTGCGGAAGT GACCGGCGGC
GATATCCTGG TCGGTAAAGT GACGCCGAAA GGCGAAACCC AGCTGACGCC GGAAGAAAAA
CTGCTGCGCG CCATCTTTGG TGAAAAAGCG TCTGACGTTA AAGATTCTTC TCTGCGCGTG
CCGAACGGCG TTTCCGGTAC GGTTATCGAC GTGCAGGTCT TTACCCGCGA TGGTGTGGAA
AAAGACAAAC GTGCGCTGGA AATCGAAGAA ATGCAGTTGA AGCAGGCCAA AAAAGACCTG
ACTGAAGAGC TGCAGATTCT GGAAGCCGGC CTGTTTGCGC GTATCCATGA CGTGCTGGTC
GCCGGCGGCG TTGAAGCCGA GAAACTGGGC AAGCTGCCGC GCGAGCGTTG GCTGGAACTG
GGGCTGACCG ACGAAGATAA ACAGAATCAG CTGGAACAGT TGGCTGAGCA GTATGACGAG
TTGAAACACG AATTCGAGAA AAAACTCGAA GCCAAACGTC GCAAAATCAC CCAGGGTGAT
GATCTGGCGC CGGGCGTGTT GAAGATCGTC AAGGTGTATC TGGCGGTTAA ACGTCAGATT
CAGCCGGGTG ACAAGATGGC GGGCCGTCAC GGTAACAAGG GTGTTATCTC CAAGATCAAC
CCGATCGAAG ATATGCCTTA TGACGAAAAC GGTACCCCGG TCGACATCGT GCTGAACCCG
CTGGGCGTTC CATCGCGTAT GAACATCGGT CAGATTCTGG AAACCCACCT GGGTATGGCG
GCGAAAGGCA TCGGCGACAA GATCAACGCC ATGCTCAAGC AGCAGCAGGA AGTGGCCAAG
CTGCGTGAAT TCATTCAGCG TGCTTACGAC CTGGGCAGCG GCGTGCGTCA GAAGGTGGAT
CTGAACACCT TCTCCGACGA AGAAGTGCTG CGTCTGGCCG ACAACCTGAA AAAAGGGATG
CCGATCGCCA CGCCGGTGTT CGATGGCGCG AAAGAAGCGG AAATCAAAGA ACTGCTGAAG
CTGGGCGATC TGCCGACTTC CGGTCAGATC CGGCTGTACG ACGGTCGTAC CGGCGAACAG
TTCGAACGTC CGGTTACTGT GGGCTACATG TACATGCTGA AGTTGAACCA CCTGGTCGAC
GACAAGATGC ATGCCCGTTC CACCGGTTCG TACAGCCTGG TTACTCAACA GCCGTTGGGT
GGTAAGGCGC AGTTCGGTGG TCAGCGCTTC GGTGAGATGG AAGTGTGGGC GCTGGAAGCT
TACGGCGCAG CCTATACCCT GCAGGAAATG CTGACGGTGA AATCCGATGA CGTGAATGGT
CGTACCAAGA TGTACAAAAA CATCGTGGAC GGCGATCACC GGATGGAGCC GGGCATGCCG
GAATCTTTCA ACGTACTGCT GAAAGAAATC CGCTCCTTGG GCATCAACAT CGAGCTGGAA
GACGAGTAA
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| Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQYGLE AAFRSVFPIQ
SYSGSAELQY VSYRLGEPVF DVKECQIRGV TFSAPLRVKL RLVIYEREAP EGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALNYSTEDI LGLFFDKIVY EINNNKLQME
LVPERLRGET ASFDIEADGK VYVEKGRRIT ARHIRQLEKD GIERIEVPVE YIAGKVLAKD
YVDTSTGEVI AMANMELSLD LLARLSQAGH KRIETLFTND LDHGPYMSET VRVDPTNDRL
SALVEIYRMM RPGEPPTREA AESLFENLFF SEDRYDLSAV GRMKFNRSLL RDAIEGSGIL
SKEDIIDVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR
ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRDGVVT
DEIHYLSAIE EGNYVIAQAN TNLDDEGHFI DELVTCRSKG ESSLFSRDQV DYMDVSTQQV
VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR
GGTVQYVDAS RIVIKVNEDE MYPGEAGIDI YNLTKYTRSN QNTCINQMPC VSLGEPVERG
DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS
RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDSSLRV PNGVSGTVID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL
TEELQILEAG LFARIHDVLV AGGVEAEKLG KLPRERWLEL GLTDEDKQNQ LEQLAEQYDE
LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN
PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGDKINA MLKQQQEVAK
LREFIQRAYD LGSGVRQKVD LNTFSDEEVL RLADNLKKGM PIATPVFDGA KEAEIKELLK
LGDLPTSGQI RLYDGRTGEQ FERPVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GDHRMEPGMP
ESFNVLLKEI RSLGINIELE DE
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