| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_2791 |
|---|
| Symbol | |
|---|
| ID | 8089612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 3260051 |
|---|
| End bp | 3260626 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644836863 |
|---|
| Product | RNA polymerase sigma factor RpoE |
|---|
| Protein accession | YP_002988390 |
|---|
| Protein GI | 242240209 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00850329 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC AGTTAGCGGA TCAGGTGCTG GTTGAGCGGG TCCAGAGAGG CGACAGAGCG
TCGTTTAATT TACTGGTCGT CCGCTACCAA CATAAGGTGG CGAGTCTGGT ATCCCGTTAT
GTTCCGCCCG GTGATGTACC TGACGTTGTG CAGGAATCAT TTATTAAAGC CTATCGCGCG
CTAGAGTCAT TTCGCGGTGA AAGCGCGTTC TATACCTGGC TGTATCGTAT CGCGGTGAAT
ACCGCAAAAA ATTATCTGGT TGCTCAGGGG CGTCGTCCAC CTTCCAGCGA TGTGGACGCC
AACGATGCCG AAAATTATGA AAATGTCGGC GCGTTAAAAG AAATTTCGAA CCCTGAGAAC
TTAATGTTGT CAGAAGAGTT ACGACGGATC GTTTTTCAGA CTATTGAGTC GTTGCCTGAA
GATTTGCGGA TGGCGATTAC ATTACGTGAA CTGGATGGGT TGAGTTATGA GGAGATTGCC
GAAATCATGG ACTGCCCCGT CGGCACCGTT CGGTCTCGAA TATTCCGCGC AAGGGAAGCG
ATTGATAATA AAGTGCAACC GCTTATTCAG CGTTAG
|
|---|
| Protein sequence | MSEQLADQVL VERVQRGDRA SFNLLVVRYQ HKVASLVSRY VPPGDVPDVV QESFIKAYRA
LESFRGESAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA NDAENYENVG ALKEISNPEN
LMLSEELRRI VFQTIESLPE DLRMAITLRE LDGLSYEEIA EIMDCPVGTV RSRIFRAREA
IDNKVQPLIQ R
|
|---|
| |