| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_2109 |
|---|
| Symbol | |
|---|
| ID | 8088276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 2495000 |
|---|
| End bp | 2495701 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644836185 |
|---|
| Product | ThiJ/PfpI domain protein |
|---|
| Protein accession | YP_002987718 |
|---|
| Protein GI | 242239537 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0113293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCACCTA TTCCCCCGTT GTCCATTGGA CTATTGCTGT TTCCCCGCTT AACGCAGCTC
GACCTGACCG GCCCTTACGA GATATTCGCC CGAATACCGC AGGCGAGCGT GCATCTGATT
TGGAAAGATC GTGCGCCGGT CAGCGCCGAT CGCGGGCTGG GTCTGATGCC GTCAACCACC
TTCGACGACT GCCCCGACCT TGATCTGATC TGCGTCCCCG GCGGCCCCGG CCAGATTGAT
CTGATGGCGG ATGACCAAAC GCTGACGTTC CTCCGGCACA AAGCGGCGCA GGCCCGATGG
ATCACCTCGG TATGCACCGG TTCGCTGGTA CTTGGCGCCG CAGGCCTGCT GCGGGGATAC
CGGGCCACGT CCCACTGGTC GGCATTGGAT CAGCTGGCGT TACTCGGCGC GGAGCCGGTC
GCCGAGCGAG TCGTACGGGA CAGGAACCGC ATCACCGGCG CGGGCGTTAC CTCCGGCATC
GATTTTGCCC TCAGCGTCGT AGCGGATATT TACGGGGCAG AGCTTGCCCA GCGCATCCAG
CTACAAATGG AGTACGATCC ACACCCGCCG TTCAATGCCG GTTCGCCTCG CACCGCGCCC
GTGGACATCA CCCATAGCGT TCAAACGAGT ATCGCCGACT TCACCGCACA TCGGCGCCAG
ATGACGGAAC AGGCCGCCGC CCGGCTTGAC CTGACGAACT GA
|
|---|
| Protein sequence | MSPIPPLSIG LLLFPRLTQL DLTGPYEIFA RIPQASVHLI WKDRAPVSAD RGLGLMPSTT
FDDCPDLDLI CVPGGPGQID LMADDQTLTF LRHKAAQARW ITSVCTGSLV LGAAGLLRGY
RATSHWSALD QLALLGAEPV AERVVRDRNR ITGAGVTSGI DFALSVVADI YGAELAQRIQ
LQMEYDPHPP FNAGSPRTAP VDITHSVQTS IADFTAHRRQ MTEQAAARLD LTN
|
|---|
| |