| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_2002 |
|---|
| Symbol | |
|---|
| ID | 8090599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 2381695 |
|---|
| End bp | 2383344 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644836081 |
|---|
| Product | Polypeptide-transport-associated domain protein ShlB-type |
|---|
| Protein accession | YP_002987614 |
|---|
| Protein GI | 242239433 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTCTG GTTTCTTGCT ATTTACACAC GCCCCAATGC TATGTTCTGC GCCGCTGACG
CCAGCTGATC GCAATGTCTT ACAACAACAG CAATCGGACG TAATTGAACA GTCACGTCAA
CAGCGGGAAG CATTACAGCA ACTTAATGAT ATTGTTCAGT CGCCCCTGCC GTCGGTAAGC
GAAGAGGGCG GCCCGTGTTT CCCCCTGCAT CGTATCGAGT TCCGTAACGG TACGCTGTTG
TCGGCGGCGG ATCAGGCCGC ATTGAGCCAG CATTATCTGA ACCGCTGCAA CAATCTCGCC
CAACTCAATC AACTGGTGCA TGACGTCAGC AATTGGTACA TCCAGCGTGG ATATATCACC
AGTCGCGCAT TTCTCAGCGA ACAGGATCTG TCCGGCGGCG TACTGCAACT GGAGATACTG
GAAGGCCGGT TGGAAGCCAT CACCATCAAT CACGAGCCGG TGCGCATGAC CGGCGTGACT
TTTCCCGCAC GCGCAGGGGA TATTCTGAAT CTGCGGGATA TCGAGCAAGG GATGGATCAG
ATCAACCGCA TGCCGACGCA GCAGGTGACG ATCGACATAG TACCGGGCAG CCAGCCGGGA
TATTCAGTCG TCAACTTGAC GCAGGCGCCG CATCTGCCGT TTACCCTCGA CGTGGGGTTT
GACAACAGTG GGCAGAGTAG TACCGGCGAA CACCAACTGA GCGGCGGCCT GACGCTTGAT
AACCCTCTGG GGCTGGCCGA TCAATGGTTC ATCAACACCG GTCACGATAG TCGATTCGCC
ACCAGTCAGC ATTCAACCAG CCTGCAATCT GGCGTCTCGA TGCCTTACGG ATACTGGACG
CTGGGGTACG TTTACTCAGA AAGCCGTTAC CGCAACGTAT TCATTAATCG CGATTATCCC
TGGCATTCGA CTGGAGATAC CGCTACCCAT CGCTTTTCCT TGTCCCGCGT CGTGTTTCGT
AACGGCACGA TGAAAACGGC CGTGAACGGC AGTCTGTCGC GACGTATCGG CAGTAACTTC
CTGAACGGAA CGCGCTTGCC GTCAAGCAGC AGAACGGTAA GCAGCCTGAC GTTAGGCATC
AACCATAGCC AGAAAGTGGC CGGTGGTTTG GCCACGTTCA ATCCCGCCTA TAGCCGCGGC
CTGCGCTGGC TAGGCGCCGA AACCGACACC GACAAAACGG ATGACGATCC TCGTTCTGAA
TTCAACAAAT GGGTGTTGTC GGCCAGTTAT TACTATCCGC TTAGCGAGCA GGTGACATGG
TTGGGTAGCC TGTACGGCCA GTATGCGGCG ACGCGGTTAT ACGGCAGCGA ACAGTTGACG
TTGGGCGGAG AGTCTTCGGT TCGAGGGTTC AGAGAGCAAT ATACGGCAGG CAATCGGGGC
GGTTTCTGGC GTAACGAGTT GAACTGGCAA GTGTGGCAGG CGCCAGTGCT GGGGAACGTC
ACATTACAGG CGGCGGTAGA CGGCGGGCAT CTGTACAACC ACAAAAAAGA CAATGACAGC
GCCGCTTCAT TGTGGGGTAG CGCGCTAGGC ATCACGGTGG CAAACCGGTG GGCAAGCCAG
CAGGTCAGCG TTGGCTGGCC GTTGTCCTAC CCGGATGGGC TAAAACCTGA TCCGGTGGTG
GTGTATTACC GGGTCGGATT GTCCTTCTGA
|
|---|
| Protein sequence | MLSGFLLFTH APMLCSAPLT PADRNVLQQQ QSDVIEQSRQ QREALQQLND IVQSPLPSVS
EEGGPCFPLH RIEFRNGTLL SAADQAALSQ HYLNRCNNLA QLNQLVHDVS NWYIQRGYIT
SRAFLSEQDL SGGVLQLEIL EGRLEAITIN HEPVRMTGVT FPARAGDILN LRDIEQGMDQ
INRMPTQQVT IDIVPGSQPG YSVVNLTQAP HLPFTLDVGF DNSGQSSTGE HQLSGGLTLD
NPLGLADQWF INTGHDSRFA TSQHSTSLQS GVSMPYGYWT LGYVYSESRY RNVFINRDYP
WHSTGDTATH RFSLSRVVFR NGTMKTAVNG SLSRRIGSNF LNGTRLPSSS RTVSSLTLGI
NHSQKVAGGL ATFNPAYSRG LRWLGAETDT DKTDDDPRSE FNKWVLSASY YYPLSEQVTW
LGSLYGQYAA TRLYGSEQLT LGGESSVRGF REQYTAGNRG GFWRNELNWQ VWQAPVLGNV
TLQAAVDGGH LYNHKKDNDS AASLWGSALG ITVANRWASQ QVSVGWPLSY PDGLKPDPVV
VYYRVGLSF
|
|---|
| |