Gene Dd703_1968 details

Gene Information

• Locus tag: Dd703_1968
• ID: 8090565
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: +
• Start bp: 2338822
• End bp: 2340675
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644836047
• Product: signal peptide peptidase SppA, 67K type
• Protein accession: YP_002987580
• Protein GI: 242239399
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.845166
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCACAA TGTGGCGAAT TTTCAGCGGA TTATTCAAGT GGGGATGGCG CCTGCTGAAT 
TTTATTCGCG AGTTTATCCT CAACCTGTTC CTGCTTGCCC TGATCCTCAT CGCTGTCGGT 
ATATACAGCC AGTTCAAAAC CGCCCAGGTT GTCGAACCCA CTCGCGGCGC CCTGCTGTTC 
GATCTGTCGG GGATCGTGGT GGACAAGCCG TCCATCAATA ACAAATTACG CCAACTGGGT 
CGGGAATTCT TTGGCGTCGC GCCGAACCGC CGCCAGGAAA ATTCGCTATT CGATATCGTC 
GATACCATCC GGCAGGCGAA AGACGACAAC AACATTACCG GCATGGTGAT GGATCTGTCT 
GATTTTTCTG GTGCCGATCA ACCCTCGCTG CAATATATCG GCAAGGCATT GCGTGAATTC 
CGTGATGCGG GCAAGCCTAT TTTCGCCATC GGCGATAACT TCACACAGGC GCAATACTAC 
CTCGCCAGCT TCGCCAACAA GATCTACCTG ACGCCGCAGG GCAATGTCGA CCTGCACGGT 
TTCGCCACCA ATAACCTCTA TTACAAGACG TTGCTGGACA AACTCAAAGT CAGCACACAT 
ATCTTCCGGG TCGGGACGTA CAAGTCCGCC GTCGAGCCGT TCATTCGCGA CGACATGTCG 
CCTGCCGCGC GCGAGGCCGA CAGCCGTTGG GTATCCCTAC TCTGGCAAAA CTACCTGAAT 
ACGGTAGCAG CCAACCGTCA GATCACCGCG CAACAACTCT TTCCCGGCGC CGACGGTTTG 
CTGAAAAACT TGCGTGCCGT GGAGGGTGAT ACGGCACGTT ATGCACTTGA GAACAAGCTG 
GTGGATGAAG TAGCGACACG CCCGGCCATC GAACAATCGC TGGTCAAAGC ATTCGGTTGG 
GATGCTAAAA ACAAGAATTT CAACGCCACC AGCATTTATG ACTATAAGCC GAATAATCCC 
GTCGCGGACA GCAACGAAAT TGCCGTCATT TTCGCCAACG GTACAATCGT CGACGGCCCG 
GAGACGCCCG GATTCGTTGG CGGAGACACC ACGGCGGATC AGATCCGCGA AGCCCGTCTG 
GATCCCAAAA TCAAAGCGGT GGTGTTACGT GTCAATAGCC CTGGCGGCAG CGTTTCCGCC 
TCGGAATTGA TCCGGGCGGA GCTGGCGGCG GTACGTCAGG CAGGCAAACC GGTCGTGGTA 
TCCATGGGGG GAATGGCCGC ATCCGGCGGT TATTGGATCT CAACGCCTGC CAGCGCCATT 
ATTGCCAGCC CGAGCACATT GACGGGCTCC ATCGGCATTT TTGGCGTACT GACTACGTTT 
GAGAACTCGC TGGATAGCGT CGGCGTGCAT ACGGATGGCG TCGCAACGTC GCCATTGGCC 
GATTTAGCCG AAACCAAAGG ATTACCGTCC GAAACGGCGC AATTGATGCA AATCAACATC 
GAGCGTGGTT ATAAAACCTT CGTCTCACTG GTCGCTCAGT CCCGTAAAAA AACACCGGAA 
GATGTGGATG CCATCGCACA GGGCCATGTC TGGATCGGTA GCGACGCCAA AGCTAACGGC 
CTGGTCGATC AGTTGGGCGA TTTTGACGAT GCGGTGAAAA AAGCAGCGGA TCTGGCCGGT 
CTGGAGCACT ATCAATTAAG CTGGTTCACT GAAAACGCCG ATCTGTTTTC TGTGATGTTC 
AGCCAGATCA GAGGTTCGGT CTACGCCATG TTGCCCACAG CGCTGCAAGC TGCGCTGCCC 
GCACCGGCGG TTCGTCTGGC GGAAACCGTG CAGACACAGA TTTCGGCGCT GAACGCCCTT 
AACGATCCAC AAAATCGTTA CGCACTTTGC CTGACCTGCG GCGAAGTTCG TTAA 

 

Protein sequence

MRTMWRIFSG LFKWGWRLLN FIREFILNLF LLALILIAVG IYSQFKTAQV VEPTRGALLF 
DLSGIVVDKP SINNKLRQLG REFFGVAPNR RQENSLFDIV DTIRQAKDDN NITGMVMDLS 
DFSGADQPSL QYIGKALREF RDAGKPIFAI GDNFTQAQYY LASFANKIYL TPQGNVDLHG 
FATNNLYYKT LLDKLKVSTH IFRVGTYKSA VEPFIRDDMS PAAREADSRW VSLLWQNYLN 
TVAANRQITA QQLFPGADGL LKNLRAVEGD TARYALENKL VDEVATRPAI EQSLVKAFGW 
DAKNKNFNAT SIYDYKPNNP VADSNEIAVI FANGTIVDGP ETPGFVGGDT TADQIREARL 
DPKIKAVVLR VNSPGGSVSA SELIRAELAA VRQAGKPVVV SMGGMAASGG YWISTPASAI 
IASPSTLTGS IGIFGVLTTF ENSLDSVGVH TDGVATSPLA DLAETKGLPS ETAQLMQINI 
ERGYKTFVSL VAQSRKKTPE DVDAIAQGHV WIGSDAKANG LVDQLGDFDD AVKKAADLAG 
LEHYQLSWFT ENADLFSVMF SQIRGSVYAM LPTALQAALP APAVRLAETV QTQISALNAL 
NDPQNRYALC LTCGEVR