Gene Dd703_1951 details

Gene Information

• Locus tag: Dd703_1951
• Symbol: oppD
• ID: 8090547
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: -
• Start bp: 2317274
• End bp: 2318263
• Gene Length: 990 bp
• Protein Length: 329 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 644836029
• Product: oligopeptide transporter ATP-binding component
• Protein accession: YP_002987563
• Protein GI: 242239382
• COG category: [E] Amino acid transport and metabolism; [P] Inorganic ion transport and metabolism
• COG ID: [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGAATA TGTCAGAAAA TCGCGAAGCG CTGCTTAACG TCAATGATTT ACGAGTCACC 
TTTGCTACGC CGGACGGTGA TGTCACCGCG GTCAACGACC TGAACTTTTC ACTGAGCGCC 
GGCGAAACGC TGGGGATTGT CGGCGAATCC GGGTCGGGTA AGTCGCAAAC GGCATTTGCG 
CTGATGGGGC TGCTGGCGGC CAATGGCCGG ATTGGCGGAT CGGCGCGCTT CAATGGGCGT 
GAAATCCTGA ATCTGCCGGA GCGCGAGCTC AACCTGCTGC GGGCAGAAGA AATCGCAATG 
ATTTTTCAGG ATCCGATGAC TTCGCTCAAC CCTTATATGC GGGTCGGCGA GCAGCTGATG 
GAAGTGTTGA TGCTGCACAA AAAGCTCGGC AAAGCGGAAG CATTCGAAGA GTCGGTGCGC 
ATGTTGGATG CGGTGAAAAT GCCGGAAGCC AGAAAGCGGA TGCGTATGTA TCCCCATGAA 
TTTTCAGGCG GTATGCGGCA GCGTGTGATG ATAGCGATGG CATTGTTGTG CCGTCCGAAG 
TTGCTGATTG CTGATGAGCC CACCACGGCA CTGGATGTGA CGGTTCAGGC GCAGATTATG 
ACGCTGCTTA ACGAACTGAA GCGCGAATTC AATACCGCCA TCATCATGAT CACCCATGAT 
TTGGGCGTTG TTGCCGGTAT CTGCGACAAA GTGCTGGTGA TGTATGCCGG GCGAACGATG 
GAATACGGCT CCGCGCAGGA GATCTTCTAC CAGCCGACCC ACCCTTACTC CATCGGCCTG 
CTCAAAGCGG TGCCGCGACT GGATGAAGAA AACGAGGAAC TGGCGACGAT CCCAGGCAAT 
CCGCCGAACC TGCTGCGTTT GCCCGCCGGA TGTCCGTTCC AGCCGCGTTG CCCGTATGCC 
CAGGAACAAT GCCATCAGGC GCCTACATTG ACGCCGTTTG GTCAGGGGCG CCTGCGCGCC 
TGTTTCCGCA GCGTGGAGGA ATTGGCATGA 

 

Protein sequence

MMNMSENREA LLNVNDLRVT FATPDGDVTA VNDLNFSLSA GETLGIVGES GSGKSQTAFA 
LMGLLAANGR IGGSARFNGR EILNLPEREL NLLRAEEIAM IFQDPMTSLN PYMRVGEQLM 
EVLMLHKKLG KAEAFEESVR MLDAVKMPEA RKRMRMYPHE FSGGMRQRVM IAMALLCRPK 
LLIADEPTTA LDVTVQAQIM TLLNELKREF NTAIIMITHD LGVVAGICDK VLVMYAGRTM 
EYGSAQEIFY QPTHPYSIGL LKAVPRLDEE NEELATIPGN PPNLLRLPAG CPFQPRCPYA 
QEQCHQAPTL TPFGQGRLRA CFRSVEELA