| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_1678 |
|---|
| Symbol | |
|---|
| ID | 8090272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 1994495 |
|---|
| End bp | 1998676 |
|---|
| Gene Length | 4182 bp |
|---|
| Protein Length | 1393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644835761 |
|---|
| Product | amino acid adenylation domain protein |
|---|
| Protein accession | YP_002987297 |
|---|
| Protein GI | 242239116 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.147696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCA TTGAGATAGT ACGTTTCTGC AATACGCATC GCATCAGGCT TTCGGTAGAG
GGGGGGCGTT TAAAGTTGAA GTCGTCAGCG CCGATCACCG ACGAGCGGTT TATTGCCAGT
GTCAAAGCGC AGAAATCAGC GCTGCTCGCT CTGTTAGCGG CACAACGCGA CGGCAGTGAC
GACGAGCGGG CTTCCGTTAT GGATGAGGAT CGGTCATCGC TGTCCTATGC GCAGCAGCGT
CTGTTTCTGC TGCATAACAT GGATCCGCAG TCCGGCGCTT ACAACATGCC GAACCAGATC
GACGTGCGGG GAAAATGGGA TCGCCAGGCA TTTGAAGGCG CCATCCGGCT GCTGGTTGCA
CGCCATGAGG TATTAAGAAC CACCTTTCAG GCCGAAGCGG GGCGGATCTG GGCGCATATT
CATGACGACC GTTATCCGGC GATAGCGTAT CAGGACTTGA GCGATTACTC CGGCCATGAG
TTGGATGAAC AGGTTCGGCT ACGGAGCCAG GCGGAAGCGT TGCGCGCGTT TGATTTGCAA
CGGGACATCC CATTGCGGAT CACCTTACTG CAACGAGCGC CAGAGCATGC CGTCCTGCTG
TTTACCTTGC CGCATATTGT TTCCGACGGT TGGTCGATGG GGGTGCTGGT CAGAGATTTT
TGCCAGTTAT ATCGCGGTCT GGCTGGCGGG GAAGCGCAGC CGCTCGCACC GTTGCGGCAT
CAGTACGCCG ATTACACCCA CGGGCAGAAA GCCTATTTTT CCTCTCACGC GATGCAGCAG
TCCATCAATT ATTGGCGCGA AAAGCTGGCC CGGTTGCCGT TGTGCCATAG CCTGCCGACG
GTGTTTGACG GCAGGGAGAA GAAGGCGTCG TTGGGGGAGA AACTGACGCT ACGGCTTGAC
CCGCCGCTGC GCGACCGCAT TACGGCGTTT TGCCAGCATC ACAATGTCAC GCTGTTTATC
TTTTTGCAGA CCGTCTTTGC TCTGCTGGTT TCACGCTATG GCAATGAGCG CGACGTCGTC
GTCGGTTTTC CTATTTCCGG CCGTGACGAC GAGCGGTTTT TCGACAATAT CGGCTGTTTC
GTCAATACGT TGCTCGTCAG AACGCGGATC GATCCCGACG ACTCGTTTCT GACTCTGCTC
ACGCACAATA CGTTGACGAT TGTCGAGGCA TACGAACATC AGCGAGTGCC GTTCGACATG
TTGGTGGAGC AGCTGAATCC ACAACGGACT TACCAGTGCA ATCCGCTGTT TCAAATCCTG
TTTACCTTGC AGAACAATGA CGCGGTCGCG GCAGTGCTTC CCGATGTCAC ATTGACGCGG
CTGGAGAATC AGACCGCGTT ACTCAAGATG GATCTAGAGG TTAGCGTAAC GGAAACGGAG
CGCGGTATTC AGATCGAGTG GCTGTATAAC CCGAACCTGT TTGAACGCTA TGTGATGGAA
GGAATGCTGG AGAGCTATCA GACGTTGATC CGTGGCGCGC TGACTTCGCC GGACGCCGGG
GTTGAGGCGT TGCCGCTGTT GTCTGCGCCA GCGGCGGACG ATCTCTTGCG AGCCGGCCGG
GCCGGGCCGT CCGCACCGGC TGATGAGTGC CTGCATCAGA TGTTCGAGGC GCAGTGCCAG
CGTTCGCCGG AGGCGGTAGC GGCGGTTTTC GGCCATCGGC GCGTCAGTTA CCGGCTCCTG
AATGCATCAG CCAATCGCCT GGCGCGCCAG TTACAGCAAG AGCATCAGAT CACGCCTGAT
ACGGTCATCG GTTTGTACTG CCAGCGCAGC GCCGACATGT TGGTATGCCT GCTGGCGATC
CTGAAAGCCG GGGCGGCCTA CCTTCCGCTT GATCCCGGTT ATCCGGAGCA GCGTATCGCC
TATATGTTGT CCCATTCCGG CATCAGACTG GTGCTTACGA CGCCGCAACT GGCCGCACGT
TTGCCGGCGG GCCCGGAGAA TAAGGCGCTG ATACTGGATG AATCGTTGTG GGTTGATGAA
TCTGACGCTG AGCGCTACCC GAACCTGGGC CCATGTTCTT TAGACAGCCT GGCTTACATC
ATCTACACCT CTGGTTCGAC CGGCACCCCG AAAGGCGTCA TGATCGCGCA CCGTGCGGTC
GTCAATTTCC TGCGCTCGAT GGCGCAGTCG CCGGGATTCA GCCATCAGGA TCGCCTGCTG
GCGGTGACGC CGATAAGCTT TGATATTTCC GTGTTGGAGC TGTTTTTGCC GTTGAGCTGC
GGCGGGCAGG TTGTTATCTG TGCCGAGCAG GATAGCCGTA ACGCGCAGAC GCTGAGTGAG
ATGCTGCTAA AACATCAGAT AACCGTTATG CAGGCCACGC CGGCCACCTG GAAACTGTTG
CAGCAAAGCG CTTTCTGGCG GGCGCATCGG CGGTTGAAAG TGCTATGCGG CGGTGAAGCC
ATCAGTCGCG AGCTGGCCGG GGCGCTGTGC GACAATATGG GATCGTTCTG GAATATGTAT
GGGCCGACGG AAACGACGAT CTGGTCAACC GCGGGGCAAA TCCATACCGC CGGCGGCGAT
ATCACCATCG GTCAGCCGGT CGCCAATACC GTCTTGTATA TCCTGAATGA ACGTCAACAG
CTGTCGCCGG CCGGTGTCGC CGGCGAGTTG TATATCGGCG GCGATGGCCT GTCCCGTGGC
TATTACCAAC GGCCCGATTT GACGGCTGAA CGTTTTACGG CCGATCCGTT CGCGCCGGCA
GGGCAGGCGC GTATTTATCG AACCGGCGAT GTCGCTAAAT GGAATGCGCA CGGGGAGATT
ACGGTGCTCG GGCGCAGCGA TAGCCAGGTG AAAATCCGTG GATACCGCGT AGAGCTGGGG
GAAATCGAAA GCGCCTTGCT ATTGCATGAG TGGGTCTGCG ACGCGGCGGT CAGGCTCAGC
GCCCGTCATG AAGGCATGCT GGTCGCTTGT GTTGTGCTGA CGCCCGCCTT GCGTCAGCGT
GCCGACCTGG ACAAGGCGAT GTTGATCGAG GCGTTCAGAG AAAGCGTATC GCAACGGCTG
CCTGATTATA TGGTGCCGCA TCAGTATCTC TTTATCGATG CATTGCCGCT GACGCCTAAC
GGTAAAGTCG ATCGCCATGC TCTGCCTGAT ATCACGCAGG TGATGGCTTC CTCTGCGCAT
TACGTCGCCG GACGCAACGA CCGGGAAAAA CGGCTTTGCC ACATTTGGGA ACAGATATTG
GATGTCGGGC AGGTCGGCAT CCATGACAAT TTTTTCAGCC TGGGCGGAAA CTCTCTGACC
ATGTTCAGAC TGTTCAATGA GATGAAAAAC AGCGGATTCA CATTCACGCT TGAGGATCTC
TTCAGGTATC AGAGCATCAA TGAACTGGAG AGCCACGCCC GCCAGCCGCT TGATGTGCGC
GCGATCGCTG TTCCAGAATC CTCCGTCGTC GTGCGGCTCA ATCACTCATC AAGCCCGCGC
ACGATATTCT GTGTCCATCC GGAAGGCGGT ATCGCTACCT GCTATTCCGC CCTCGCCGGG
CGACTGGCTG ACTACGCGCA GTGTTATGGT CTACAGGCCC CGGCGATATT CGGCGATTTT
GGCCCCAGCA CCATCGACAA TCTGGCGAAC TACTATGTTG ACGTCATGCT GCGCCAGCAG
CCGACGGGGC ATTACCGTAT TCTGGGATGG TCGCTCGGCG GCAGCATCGC CTGGCAGATG
GCGGTTCAAC TGCGTCGTCG TGGTTATCAG GTGGATTACC TGGGCGTTTT TGACTCGGAG
CTGCCGATTA TGGCCGCGGT AGGCGAACGG GAGCGTCTTG CCTGGGCGGC ATTGGTTAAC
GATTTCAGCG CGGATGGCTT GTCTCTGGAT GAGGCGTTGC TGGCGTCGTT GACGCCGGCC
GGCCGTAAGG ATTATCTGCT GGAGCAAATC GCGATCGGTA AGATTCGGCC TGAAGGCATC
ACAGAGGAAA TGACCGGCCG TTATCTGGAT TATCTTATCG ATGTTAAACA CTCAAAGTAT
GACACCCACT TAACGGCGGC CAACATTGAT ATGGATTATT ACGCCATCGA AAACAGTATC
TATGCTGTAC CAGGCCGGTA TCGCGGCTGG GATGATGTCT CGACGGGCAG GGTGACGCTG
CTGCCTGCTC AGGGCAGCCA TCTGACCATG CTGCAACCGC CGTTCGTAAA CGAATTATCC
GACACCTTGC GTACACGGCT GGGAGGAGTG GCAGATGAGT GA
|
|---|
| Protein sequence | MDIIEIVRFC NTHRIRLSVE GGRLKLKSSA PITDERFIAS VKAQKSALLA LLAAQRDGSD
DERASVMDED RSSLSYAQQR LFLLHNMDPQ SGAYNMPNQI DVRGKWDRQA FEGAIRLLVA
RHEVLRTTFQ AEAGRIWAHI HDDRYPAIAY QDLSDYSGHE LDEQVRLRSQ AEALRAFDLQ
RDIPLRITLL QRAPEHAVLL FTLPHIVSDG WSMGVLVRDF CQLYRGLAGG EAQPLAPLRH
QYADYTHGQK AYFSSHAMQQ SINYWREKLA RLPLCHSLPT VFDGREKKAS LGEKLTLRLD
PPLRDRITAF CQHHNVTLFI FLQTVFALLV SRYGNERDVV VGFPISGRDD ERFFDNIGCF
VNTLLVRTRI DPDDSFLTLL THNTLTIVEA YEHQRVPFDM LVEQLNPQRT YQCNPLFQIL
FTLQNNDAVA AVLPDVTLTR LENQTALLKM DLEVSVTETE RGIQIEWLYN PNLFERYVME
GMLESYQTLI RGALTSPDAG VEALPLLSAP AADDLLRAGR AGPSAPADEC LHQMFEAQCQ
RSPEAVAAVF GHRRVSYRLL NASANRLARQ LQQEHQITPD TVIGLYCQRS ADMLVCLLAI
LKAGAAYLPL DPGYPEQRIA YMLSHSGIRL VLTTPQLAAR LPAGPENKAL ILDESLWVDE
SDAERYPNLG PCSLDSLAYI IYTSGSTGTP KGVMIAHRAV VNFLRSMAQS PGFSHQDRLL
AVTPISFDIS VLELFLPLSC GGQVVICAEQ DSRNAQTLSE MLLKHQITVM QATPATWKLL
QQSAFWRAHR RLKVLCGGEA ISRELAGALC DNMGSFWNMY GPTETTIWST AGQIHTAGGD
ITIGQPVANT VLYILNERQQ LSPAGVAGEL YIGGDGLSRG YYQRPDLTAE RFTADPFAPA
GQARIYRTGD VAKWNAHGEI TVLGRSDSQV KIRGYRVELG EIESALLLHE WVCDAAVRLS
ARHEGMLVAC VVLTPALRQR ADLDKAMLIE AFRESVSQRL PDYMVPHQYL FIDALPLTPN
GKVDRHALPD ITQVMASSAH YVAGRNDREK RLCHIWEQIL DVGQVGIHDN FFSLGGNSLT
MFRLFNEMKN SGFTFTLEDL FRYQSINELE SHARQPLDVR AIAVPESSVV VRLNHSSSPR
TIFCVHPEGG IATCYSALAG RLADYAQCYG LQAPAIFGDF GPSTIDNLAN YYVDVMLRQQ
PTGHYRILGW SLGGSIAWQM AVQLRRRGYQ VDYLGVFDSE LPIMAAVGER ERLAWAALVN
DFSADGLSLD EALLASLTPA GRKDYLLEQI AIGKIRPEGI TEEMTGRYLD YLIDVKHSKY
DTHLTAANID MDYYAIENSI YAVPGRYRGW DDVSTGRVTL LPAQGSHLTM LQPPFVNELS
DTLRTRLGGV ADE
|
|---|
| |