| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_1617 |
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| Symbol | |
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| ID | 8090211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | - |
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| Start bp | 1905000 |
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| End bp | 1908443 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644835700 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002987236 |
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| Protein GI | 242239055 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.89425 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAAC AATATCGCTA CTCCTTACCT GCCACTGCAG GCGAACAACG TCTGCTAGGC
CAGCTTACCG GCGCCGCTTG CGCCGTTGAA TGTGCGGAAA TCATTGAACG CCATACCGGC
CTGGTGGTAC TGATTGCACC AGACATGCAG AATGCGCTGC GACTGCGGGA TGAAATCCAG
CAGTTCAGCG AATTGCCGAT CATGACGTTG CCCGATTGGG AAACCCTGCC CTATGACAGC
TTTTCCCCGC ATCAGGAAAT CATCTCCGCC CGTCTGTCCA TCCTCTACCA GTTGCCCACG
CTGACGCGCG GCGTGCTGAT TCTACCGGTC AACACTCTGA TGCAGAAAGT GTGTCCGCAT
ACCTTCCTGC ATGGGCATGC GTTGGTGTTG AAAAAAGGGC AACGGTTATC GCGGGACAAA
TTGCGCAGCC AGTTGGAACA AGCCGGCTAC CGCAACGTCG ATCAAGTGAT GGAGCACGGT
GAATTCGCCA CTCGCGGTGC GCTGCTCGAT CTGTTCCCGA TGGGGAGTGA AGAGCCGTTC
CGCATTGATT TTTTTGACGA TGAAATCGAC AGTTTAAGAT TGTTCGATGT CGATACTCAG
CGAACGCTGA ACGAAGTTGA CCACATCAAC CTGCTGCCCG CCCGGGAATT CCCCACCGAA
AAAAACGCGA TAGAGCTGTT CCGCAGCCAA TGGCGCGAGC GGTTCGAGGT ACGCCGGGAT
GCCGACCATC TCTACCAGTT GGTGAGCAAA AATATTCTCC CTGCCGGGAT CGAATACTGG
CAGCCGCTGT TTTTCAGCCA ACCGCTGCCA ACCTTGTTCA GCTATCTGCC CGCCGGTACG
TTGCTGGTTA ACACCGGCGA TATTCAGAGT AGCGCCGAAC GTTTCTGGTT GGATATCCAG
CAGCGCTACC AAAGCCGACG CATTGACCCG ATGCGTCCGT TACTGCCGCC GGACGATCTG
TGGCTGCCGG TGGATGCGCT GTTCGCTGAA CTGAAGCCCT GGCCGCGCGT CCAGTTGCGC
CAGGAGACCC TGCCAAAAAA AGCGGCTCAC GTAAATCTGG GCTATGAAGC CCTGCCCGAT
CTGGCGATCC GCCATCAAAA CAAATCGCCG CTGGATGCAT TACGCCAGTT TACCGAACAG
TTCGACGGCC AGATCATTTT CTCCGTGGAA AGCGAAGGAC GCCGTGAAAC GTTGCAGGCG
TTGCTATCTC GCATCAAGAT CGTACCGGTG GCGATCCCGC GTCTGGCTGC AAGCGCGCGA
TTCTCGCTGA CGATCGGCGC CAGCGAACAC GGCTTTATCG ATACGCTGCG CCAGCGGGCG
CTCATCTGCG AGAGCGACTT GCTCGGTGAG CGCATCAATC GCCGTCGGCA GGATAACCGC
CGCACCATCA ACGCCGATAC GCTGATCCGC AATCTGGCGG AGCTGCGCCC CGGCCAGCCA
GTGGTGCACC TGGAACATGG CGTTGGCCGG TATGTAGGAT TAACCACCCT GGAAGCGGGC
GGCGTGAAAG CCGAATATCT GATCCTGCAC TACGCCGGCG AAGATAAACT GTATGTGCCG
GTCTCCTCGC TGCACCTGAT CAGCCGTTAC GCAGGCGGCG CCGAAGACAA CGCGCCGCTG
CATAAACTGG GTGGCGACGC CTGGGCGCGC GCCCGACAAA AAGCGGCCGA GAAAGTGCGC
GACGTCGCCG CTGAACTGCT GGATGTCTAC GCCCAACGGG CAGCCAAAAC CGGCTTTGCC
TTCCGGCACA ACCGCGAGCA ATACCAGTTG TTCTGTCAAC GCTTTCCGTT TGAAACCACG
CCGGATCAGG AACAGGCCAT CAACGCGGTG CTGAGCGACA TGTGTCAGCC GCTGGCCATG
GATCGCCTGG TGTGCGGCGA CGTCGGTTTC GGCAAAACCG AGGTGGCGAT GCGCGCCGCT
TTCCTGGCGG TGGAGAACCA CAAACAGGTG GCCGTGCTGG TTCCCACCAC GCTGCTGGCT
CAGCAACACT ACGACAACTT CCGCGACCGC TTCGCCAACT GGCCGGTGCG GATCGAAATG
CTGTCCCGTT TCCGCAGCCA GCGCGAGCAG ACGCAAGTGC TGGAGGAAAC GCAGGAGGGG
AAGGTTGATA TTCTGATCGG CACCCATAAG CTGCTGCAAA GCGACGTCCA CTGGCGTGAT
TTGGGCTTGT TGATCGTCGA TGAAGAACAC CGGTTCGGGG TGCGGCACAA AGAACGCATC
AAAGCCATGC GCGCCAATGT GGATATTCTG ACCTTAACGG CGACGCCGAT CCCCCGCACG
CTGAACATGG CCATGCACAA CATCCGCGAT CTGTCCATCA TCGCTACGCC GCCGGCCCGC
CGTCTGGCGG TCAAAACCTT TGTGCGCGAG TATGACAGTT TGGTGGTGCG TGAAGCCATT
CTGCGTGAGA TCCTGCGCGG CGGTCAGGTT TATTACCTCT ACAACGATGT GGAAAATATC
GGCAAAGCCG CGCAGCGATT GGGTGAATTG GTGCCGGAAG CTCGCATCGC CATCGGCCAC
GGTCAGATGC GCGAGCGCGA TCTGGAACGG GTGATGAACG ACTTCCATCA CCAGCGTTTC
AACGTGCTGG TGTGCACCAC CATTATCGAG ACCGGCATCG ATATCCCCAG CGCCAACACC
ATCATCATCG AGCGGGCCGA CCATTTCGGC CTGGCACAGT TGCATCAGTT GCGCGGCCGC
GTCGGTCGTT CACATCATCA GGCTTACGCC TATCTGCTGA CCCCGAATCC CAAGACCATG
AGCGCCGATG CCCACAAACG GCTGGAGGCC ATCGCTTCGC TGGAGGATCT GGGTGCCGGT
TTTGCCCTCG CCACCCATGA TCTGGAGATC CGCGGCGCCG GCGAGCTGCT GGGGGAAGAC
CAAAGCGGCC AGATGGAAAG CGTGGGCTTT TCGTTGTACA TGGAGCTGCT GGAAAGCGCG
GTGGAATCAC TCAAGGCCGG GCGCGAGCCG TCACTGGAGG ATTTGATCAG CAGTCAGACG
GAGGTCGAAC TGCGCCTGCC AGCCCTGCTG CCCGACGATT TTATTCCCGA CGTCAACACC
CGTCTGTCGT TTTACAAGCG CATCGCCAGC GCCCATAGCG ACGACGAGCT GGATGATCTG
AAAGTTGAAC TGATCGACCG CTTCGGCAAA CTGCCGGATG CCGCCCGCAA CCTGCTGCAA
ATAGCCGGGC TGCGTCAGCA GGCACAATCG CTGGGGATCA AACGGATAGA AGGTAATGAT
AAAGGCGGTT TCGTCGAGTT CAGCCCGCAT AACCGTGTCG ATCCGACGCA CCTGATCGGT
CTGTTGCAGC GCAACCCGAG CGTCTATCGT CTGGATGGCC CGACCCGTCT GAAATTTATT
CGGGAACAAG GCGATAGACA GCAGCGGCTG ACATTTGTCG CTGAATTACT TAACGATATG
GCGCAGCATA CCGGTTCCGC CTAA
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| Protein sequence | MPEQYRYSLP ATAGEQRLLG QLTGAACAVE CAEIIERHTG LVVLIAPDMQ NALRLRDEIQ
QFSELPIMTL PDWETLPYDS FSPHQEIISA RLSILYQLPT LTRGVLILPV NTLMQKVCPH
TFLHGHALVL KKGQRLSRDK LRSQLEQAGY RNVDQVMEHG EFATRGALLD LFPMGSEEPF
RIDFFDDEID SLRLFDVDTQ RTLNEVDHIN LLPAREFPTE KNAIELFRSQ WRERFEVRRD
ADHLYQLVSK NILPAGIEYW QPLFFSQPLP TLFSYLPAGT LLVNTGDIQS SAERFWLDIQ
QRYQSRRIDP MRPLLPPDDL WLPVDALFAE LKPWPRVQLR QETLPKKAAH VNLGYEALPD
LAIRHQNKSP LDALRQFTEQ FDGQIIFSVE SEGRRETLQA LLSRIKIVPV AIPRLAASAR
FSLTIGASEH GFIDTLRQRA LICESDLLGE RINRRRQDNR RTINADTLIR NLAELRPGQP
VVHLEHGVGR YVGLTTLEAG GVKAEYLILH YAGEDKLYVP VSSLHLISRY AGGAEDNAPL
HKLGGDAWAR ARQKAAEKVR DVAAELLDVY AQRAAKTGFA FRHNREQYQL FCQRFPFETT
PDQEQAINAV LSDMCQPLAM DRLVCGDVGF GKTEVAMRAA FLAVENHKQV AVLVPTTLLA
QQHYDNFRDR FANWPVRIEM LSRFRSQREQ TQVLEETQEG KVDILIGTHK LLQSDVHWRD
LGLLIVDEEH RFGVRHKERI KAMRANVDIL TLTATPIPRT LNMAMHNIRD LSIIATPPAR
RLAVKTFVRE YDSLVVREAI LREILRGGQV YYLYNDVENI GKAAQRLGEL VPEARIAIGH
GQMRERDLER VMNDFHHQRF NVLVCTTIIE TGIDIPSANT IIIERADHFG LAQLHQLRGR
VGRSHHQAYA YLLTPNPKTM SADAHKRLEA IASLEDLGAG FALATHDLEI RGAGELLGED
QSGQMESVGF SLYMELLESA VESLKAGREP SLEDLISSQT EVELRLPALL PDDFIPDVNT
RLSFYKRIAS AHSDDELDDL KVELIDRFGK LPDAARNLLQ IAGLRQQAQS LGIKRIEGND
KGGFVEFSPH NRVDPTHLIG LLQRNPSVYR LDGPTRLKFI REQGDRQQRL TFVAELLNDM
AQHTGSA
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