| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_0848 |
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| Symbol | rumA |
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| ID | 8089984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | + |
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| Start bp | 966791 |
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| End bp | 968119 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644834919 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_002986480 |
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| Protein GI | 242238299 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000210259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAT TCTACTCTCC AAACCGGCGC GTGACGACCC GGCAAATCCT CACCGTGACG
GTGGACTCAC TCGATTCGTT CGGGCAGGGC GTCGCCCGCC ATGAGGGCAA GACCCTGTTT
ATTCCCGGAG TGCTGCCGGG GGAACAAGCC GAAGTCCAAC TGACGACAGA AAAGCGCCAG
TTTGCCCATG CCCGGTTGCG CCGCCGGTTG AACAGCAGCG CTGAGCGGGT TGAACCGCGG
TGTCCGCATT TTTCCGTCTG CGGCGGTTGC CAGCAGCAGC ATGCCGGCAT GGCGTTGCAG
CAGCGCAGCA AAGCGGCGGC GTTGCGCCAT CTGATGCGGC GGGAAACCGG CGTGGAGATG
CCGGAACCGG TGGTGATCGA CGGCCCTGAT TATGGCTATC GCCGTCGGGC TCGGCTGGCA
TTGCTGTATC AACCGAAAAC TCGTCAATTG CTGATGGGGT ACCGCCGGGA AGGGTCGCAC
GATCTGGCGG ATATTCATGT TTGTCCTGTT CTGCATCCGG CGCTGGAGGC GTTGCTGACT
CCGCTGCGCG ATTGTCTGGC CGGTTTGAAG GCGGCCAAAC GGCTTGGGCA TGTGGAACTG
GTGATGGCGG AGCAGGGGCC GTTGGTGGTG CTGCGTCATC TGGATGTATT GCAGGAGGCC
GATCGGCAGG CGCTGAACGA TTTTGGCGCT CGCGTTGGCT GCGCGTTGTT TCTGGCGCCG
GAGGCGGGTG CGCTGGCGTG TCTGCGTGGC GCAGCGCCTT CGTACCGGAT CGATGGGTTA
TCGCTGGCAT TCAGCCCGCG CGATTTTATT CAGGTCAACG ACGAGGTTAA TCAGCGCATG
GTGGCGCAAG CGCTGGAATG GCTTGACCCG CAGCCGCATG AGCGGGTGCT CGATCTGTTT
TGCGGCATGG GAAACTTTAC GCTGCCGCTG GCGCGCCGGG CAGCCAGCGT GGTCGGCGTG
GAAGGTGTGG CCGCTCTGGT GGAGAAAGGG CGTGAAAACG CCGAGCGCAA TGCGTTCGGT
AATGTCACAT TCTTTCACCA GAACCTGGAA GAAGACGTGA CACGGCAGCC GTGGGCCGCC
CAGGGTTTTG ATAAGATATT GCTCGATCCG GCGCGAGCCG GTGCGCCCGG TGTGATGTCA
CAGATTGTGA AGTTGACCCC CGGCCGCGTG GTTTATATAT CCTGTAATCC GACTACGCTG
GCGCGTGACA GCCGGGTACT GCTGGCGGCA GGGTACCGGT TGGAGAAGCT GGCGATGCTG
GACATGTTTC CACATACCGG ACATCTTGAG TCGATGGCAC TGTTTTTGCT TGACTCCAAC
GTGCGGTAA
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| Protein sequence | MAQFYSPNRR VTTRQILTVT VDSLDSFGQG VARHEGKTLF IPGVLPGEQA EVQLTTEKRQ
FAHARLRRRL NSSAERVEPR CPHFSVCGGC QQQHAGMALQ QRSKAAALRH LMRRETGVEM
PEPVVIDGPD YGYRRRARLA LLYQPKTRQL LMGYRREGSH DLADIHVCPV LHPALEALLT
PLRDCLAGLK AAKRLGHVEL VMAEQGPLVV LRHLDVLQEA DRQALNDFGA RVGCALFLAP
EAGALACLRG AAPSYRIDGL SLAFSPRDFI QVNDEVNQRM VAQALEWLDP QPHERVLDLF
CGMGNFTLPL ARRAASVVGV EGVAALVEKG RENAERNAFG NVTFFHQNLE EDVTRQPWAA
QGFDKILLDP ARAGAPGVMS QIVKLTPGRV VYISCNPTTL ARDSRVLLAA GYRLEKLAML
DMFPHTGHLE SMALFLLDSN VR
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