| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_0835 |
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| Symbol | ligA |
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| ID | 8089971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | + |
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| Start bp | 948566 |
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| End bp | 950620 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644834906 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_002986467 |
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| Protein GI | 242238286 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGAAA AAAAGCCGAT GCCAATGAAT GATACCTCCG CCGCCGCAGT GCAGATTGAT
GCGCTGCGCG CCCAACTGCG TTATCACGAA TACAAGTATC ACGTCGAAGA TGCCCCGGAA
ATTCCCGATG CGGAATACGA CAAGCTGATG AACGCGCTGA AACTGCTGGA GCAGGCGCAT
CCCGAGTGGG TGACGTCGGA TTCGCCGACC CAGCGGGTGG GAGCGACGCC GTTGGCGGGG
TTCGATAACG TTCAACATGA AGTCCCGATG TTGTCGCTGG ACAATGTATT TGACGCAGAG
AGTTTTCAGG CTTTCGTGAA ACGTATCGGC GATCGGCTGA AAAGCGACGA AGCCTTGAGG
TTTTGTTGCG AGCTGAAGCT GGACGGCCTG GCGGTCAGTC TGTTGTACGA GGACGGCGTG
CTGGTGCGCG CGGCGACGCG CGGCGACGGC TCCACCGGTG AAAATATCAC TTCCAATATC
CGTACCATCG GTGCGATACC GCTGCGGTTG CGGGGTGACA ACATTCCGCG TCGCCTGGAA
GTGCGCGGTG AAGTGTTTAT GAAGCATAAA GGCTTCGAAG CGCTCAATGA GGAAGCGCGC
CGTACCGGCG GCAAGGTGTT TGCCAATCCG CGTAATGCGG CGGCAGGCTC GTTGCGTCAG
CTCGATCCGC GTATTACCGC TAAACGTCCC TTGACTTTTT TCTGCTACGG CGTGGGGTTG
ATGGAGGGCG GTTCATTGCC CGACAGCCAC TGGCAGCGAC TGATGCAGTT TCGCGAGTGG
GGGTTGCCGG TCAGTGATCG TATCCGATTG TGTACCGGCG GCGATGAGGT GCTGGCGTTT
TACCAGCATG TGGAAGCGGT ACGCGATACG CTGGGATTTG ATATCGATGG CGTGGTGATC
AAGGTCGATG ATTTGGCGTT GCAGGAGCGG CTGGGGTTTG TGGCGCGGGC GCCGCGTTGG
GCGGTGGCGT TCAAATTCCC GGCGCAGGAA CAGCTGACCT GGCTGCGCGA TGTGGAGTTT
CAGGTAGGGC GCACCGGCGC CATCACGCCG GTCGCCAGAT TGGAGCCGGT GGCGGTGGCG
GGCGTTATCG TCAGCAACGC CACGTTGCAC AATGCGGATG AGATCGACCG GTTGGGGATC
CAGATTGGCG ATCGCGTTGC CGTTCGACGT GCTGGTGATG TGATCCCGCA GATTGTCAGC
GTGGTATTGC CGGATCGCCC GGCGGATGCC CGCCCGGTGG TGTTTCCGAC GCAGTGCCCG
GTGTGCGGTT CCGATGTTGA GCGGGTGGAC GGTGAAGTGG TGACTCGTTG CACTGGCGGC
TTGTTCTGCG CTGCACAACG TAAAGAGGCG CTCAAGCACT TCGTTTCCCG CCGTGCGCTG
GATGTGGAAG GGATGGGCGA TAAAATTATC GACCAGCTGG TCGAAAAAGA ATACGTCAAG
ACGCCGGCGG AGCTGTTTCG TCTGGACATC GGCATTCTTA CCCGCCTGGA ACGTATGGGG
CCGAAGTCGG CGCAGAATCT GGTGAATGCG CTGGATAAAG CCAAATCCAC CACGTTTGCC
CGTTTCCTGT ATGCGTTGGG CATTCGGGAT GTCGGCGAAG CGACGGCCGC TGGCCTGGCC
GCGCACTTCG GAACGCTGGA CGCGCTGATG ACCGCCGATG TGGACACGCT GCAGCAGGTA
CCGGATGTCG GCATCGTGGT GGCGACGCAT GTGCGGCATT TTCTGGATGA GGAGCATAAC
CAGCAGATAA TTCGTGAACT GATCGGCCCG GAGGTTGGCC TGCGCTGGCC AGATCCGGTG
GTGGTCGACG CCGGGGCGCT GGATAACCCG TTCGCGGGTA AAACCGTGGT GCTGACGGGC
TCGCTCAGCC TGTTGTCCCG CGATGAGGCG AAAGATCGCC TGACTGCGCT GGGGGCGAAG
GTCAGCGGCA GTGTGTCGAA GAAGACCGAT CTGGTGATCG CGGGCGAGGC GGCGGGCTCC
AAACTGGCGA AAGCGCAGGC GCTGGGGATC GACGTGATTG ATGAAGTGGA AATGATGCGG
CTGCTGGGGC AGTAA
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| Protein sequence | MSEKKPMPMN DTSAAAVQID ALRAQLRYHE YKYHVEDAPE IPDAEYDKLM NALKLLEQAH
PEWVTSDSPT QRVGATPLAG FDNVQHEVPM LSLDNVFDAE SFQAFVKRIG DRLKSDEALR
FCCELKLDGL AVSLLYEDGV LVRAATRGDG STGENITSNI RTIGAIPLRL RGDNIPRRLE
VRGEVFMKHK GFEALNEEAR RTGGKVFANP RNAAAGSLRQ LDPRITAKRP LTFFCYGVGL
MEGGSLPDSH WQRLMQFREW GLPVSDRIRL CTGGDEVLAF YQHVEAVRDT LGFDIDGVVI
KVDDLALQER LGFVARAPRW AVAFKFPAQE QLTWLRDVEF QVGRTGAITP VARLEPVAVA
GVIVSNATLH NADEIDRLGI QIGDRVAVRR AGDVIPQIVS VVLPDRPADA RPVVFPTQCP
VCGSDVERVD GEVVTRCTGG LFCAAQRKEA LKHFVSRRAL DVEGMGDKII DQLVEKEYVK
TPAELFRLDI GILTRLERMG PKSAQNLVNA LDKAKSTTFA RFLYALGIRD VGEATAAGLA
AHFGTLDALM TADVDTLQQV PDVGIVVATH VRHFLDEEHN QQIIRELIGP EVGLRWPDPV
VVDAGALDNP FAGKTVVLTG SLSLLSRDEA KDRLTALGAK VSGSVSKKTD LVIAGEAAGS
KLAKAQALGI DVIDEVEMMR LLGQ
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