Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd703_0444 |
Symbol | |
ID | 8088679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya dadantii Ech703 |
Kingdom | Bacteria |
Replicon accession | NC_012880 |
Strand | + |
Start bp | 473799 |
End bp | 474626 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644834507 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002986078 |
Protein GI | 242237897 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0043385 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTGAAT ATCAATCTTT TGCTGTTTTC GGTAACCCTA TCGCGCATAG CAAGTCTCCG CGTATTCATA CGTTATTTGC AGAGCAGTCG GGTATTTTAT TGAACTATGA ACGGTTGCAA GCTCCCGTTG ATGAGTTTGA GCTGTACCTC CATGCATATT TTCAATCTGG CGCAGCCGGA GCCAATATTA CCGCACCATT TAAAGAACGT GCCTGCGTCG TGGTAGATTC TCTGAGTCCG CGAGCTGCCG AGGCATGTGC GGTTAATGTC GTAAAAAAAA TGGCGGATGG TACATTATTT GGTGACAATA CTGATGGTAT CGGTCTGCTG AGTGACTTGC AGCAAAATGG GCTAATACAG CCTGGTGATC GGGTACTGCT GGTGGGGGCT GGTGGTGCCG CGCGTGGGGT GATCCAACCT TTGCTAGCTT ATGGTTGTTC TTTGATTGTC ACCAACAGAA CACTCGATAA AGCAGAAATG CTGGCCAGTC ATTTCAGTGA ACAAGGAAAC ATACGCGCGT TGCCGCAATC ATCGCTGACG AGCGAAATGT TCGATCTGAT CATCAATGCA ACCTCATCAG GTGTATACGG CAATATCCCC GATCTTCCCC CCTCGTTGAT TAATGCTCAT GTTCGCTGTT ACGACATGTT TTATTTACCG GAACCGACTC CGTTTTTGCA ATGGTGTACA CAGCAGGGGG CGGATAAATG CGTTGATGGG CTAGGGATGC TGGTCTGGCA AGCAGCTCAT GCATTTAACT TGTGGCATGG CGTCATGCCG CAGACTGAGC CTGTCATTCG ACAACTGAAA TTGGAATTTA TGTCGTGA
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Protein sequence | MSEYQSFAVF GNPIAHSKSP RIHTLFAEQS GILLNYERLQ APVDEFELYL HAYFQSGAAG ANITAPFKER ACVVVDSLSP RAAEACAVNV VKKMADGTLF GDNTDGIGLL SDLQQNGLIQ PGDRVLLVGA GGAARGVIQP LLAYGCSLIV TNRTLDKAEM LASHFSEQGN IRALPQSSLT SEMFDLIINA TSSGVYGNIP DLPPSLINAH VRCYDMFYLP EPTPFLQWCT QQGADKCVDG LGMLVWQAAH AFNLWHGVMP QTEPVIRQLK LEFMS
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