Gene Rpic12D_4586 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4586 
Symbol 
ID8022274 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp1232651 
End bp1233589 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content64% 
IMG OID644833358 
Product5-dehydro-4-deoxyglucarate dehydratase 
Protein accessionYP_002984498 
Protein GI241666139 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.546959 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.879793 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCGAT ACAGCCCCAA AGAGTTCGCC CAACAGATCG GCTCCGGTCT GCTGTCCTTC 
CCCATCACGC ACTTCAAGGC GTCGGATCTG TCGTTCGACG AGGCCGCGTA TCGCGCCAAC
CTCAGCTGGC TGTTCAGCCA CGAGGCAGCC GGCCTGTTTG CGGCGGGTGG CACGGGCGAA
TTCTTCTCGC TCACCGCAGC TGAGACGGAC CGCGTGGTGC GTGCTGCCGT GGCTGAAACC
GCCGGCAAGA TTCCGGTGAT CGCCCCGGCC GGCCGCGGCA CGGCCGAATC GATCGAATAC
TGCAAAGCCG CAGAAGCTGC CGGCGCCGAC GGCATCCTGC TGCTGCCGCC GTACCTGACC
GAAGCCTCTG CCGACGGCGT GGCCGCGCAC GTGGAGCAGG TCTGCAAATC GACCAAGCTC
GGCGTGATCG TCTACAACCG CGCCAACCAG GTCCTCGACG AGAACCACCT GGAACGCCTG
GCAGACCGCT GCCCGAACCT GGTCGGCTTC AAGGACGGCG TGGGCGATCT GGAACTGATG
ACGCGCATTT ACGCCCGCCT GGGCGACCGC TTTACCTATG TCGGCGGCCT GCCGACGGCC
GAGACTTTTG CACTGCCGTA CCTGACGATG GGCGTGACGA CGTATTCGTC GGCCATCTTC
AACTTCGTGC CGAAGTTCGC GCTAGAGTTC TACGCCGCCG TGCGCGCGTT CGACAATGCC
AAGGTCTACA AGATGCTCAA CGAGTTCGTG CTGCCGTACA TCCAGCTGCG CAACCGCAAG
CGCGGCTATG CGGTGTCGAT CGTCAAGGCC GGTATGAAGG TCATCGGCCG TGACGCAGGT
CCGGTCCGTG CTCCGTTGAC CGACCTGACC GACGCCGAGA TTGCAGAACT GTCGGCGTTG
GTGTCGCGCG TTGCCGAAGT GGAAAAGCTG GCGGCCTGA
 
Protein sequence
MSRYSPKEFA QQIGSGLLSF PITHFKASDL SFDEAAYRAN LSWLFSHEAA GLFAAGGTGE 
FFSLTAAETD RVVRAAVAET AGKIPVIAPA GRGTAESIEY CKAAEAAGAD GILLLPPYLT
EASADGVAAH VEQVCKSTKL GVIVYNRANQ VLDENHLERL ADRCPNLVGF KDGVGDLELM
TRIYARLGDR FTYVGGLPTA ETFALPYLTM GVTTYSSAIF NFVPKFALEF YAAVRAFDNA
KVYKMLNEFV LPYIQLRNRK RGYAVSIVKA GMKVIGRDAG PVRAPLTDLT DAEIAELSAL
VSRVAEVEKL AA